| blastp_df |
BLASTP Results for test Proteins |
| eggnog_df |
EggNOG Functional Annotation Results |
| gclink |
Gene-Cluster Discovery, Annotation and Visualization |
| gc_add |
Complete Gene Clusters by Adding Missing ORFs |
| gc_cal |
Identify and Extract Gene Clusters from Scaled BLAST Data |
| gc_cluster |
Identify Breakpoints of Gene Clusters within a Contig |
| gc_plot |
Plot Scaled Gene Clusters with Arrows |
| gc_position |
Extract ORF Positions for One Specific Gene Cluster |
| gc_range |
Determine ORF Range for a Candidate Gene Cluster |
| gc_scale |
Scale Gene-Cluster Coordinates for Visualization |
| KO_group |
KEGG Orthology (KO) Group Classification |
| length_filter |
Remove Length Outliers from BLAST Results |
| orf_extract |
Extract ORF and Genome Information from BLAST or BLASTP Results |
| orf_locate |
Parse ORF Coordinates from Prodigal FASTA Headers |
| PGC_group |
Photosynthesis Gene Classification Groups |
| photosynthesis_gene_list |
Photosynthesis Gene List |
| seq_data |
Genomic Sequence Data with Annotations |
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