State-Space Mass-Balance Model for Marine Ecosystems

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Documentation for package ‘ecostate’ version 0.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

abm3pc_sys	Adams-Bashford-Moulton for system of equations
add_equilibrium	Compute equilibrium values
compute_nll	Compute negative log-likelihood for EcoState model
compute_tracer	Calculate tracers, e.g., trophic level
dBdt	Dynamics from EcoSim
ddirmult	Dirichlet-multinomial
eastern_bering_sea	eastern Bering Sea ecosystem data
ecostate	fit EcoState model
ecostate_control	Detailed control for ecostate structure
ginv	Penrose-Moore pseudoinverse
gulf_of_alaska	eastern Gulf of Alaska data
logLik.ecostate	Marginal log-likelihood
ode23	Non-stiff (and stiff) ODE solvers
plot_foodweb	Plot foodweb
print.ecostate	Print fitted ecostate object
print_ecopars	Print EcoSim parameters
rk4sys	Classical Runge-Kutta for system of equations
stanza_settings	Detailed control for stanza structure
whitehouse_2021	Full rpath inputs for eastern Bering Sea