Tools for Causal Discovery on Observational Data

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Documentation for package ‘causalDisco’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

causalDisco-package	causalDisco: Causal Discovery in R
+.Knowledge	Merge Knowledge Objects
add_exo	Add Exogenous Variables to Knowledge
add_exogenous	Add Exogenous Variables to Knowledge
add_tier	Add a Tier to Knowledge
add_to_tier	Add Variables to a Tier in Knowledge
add_vars	Add Variables to Knowledge
as_bnlearn_knowledge	Convert Knowledge to bnlearn Knowledge
as_pcalg_constraints	Convert Knowledge to pcalg Knowledge
as_tetrad_knowledge	Convert Knowledge to Tetrad Knowledge
BnlearnSearch	R6 Interface to bnlearn Search Algorithms
boss	BOSS Algorithm for Causal Discovery
boss_fci	BOSS-FCI Algorithm for Causal Discovery
cat_data	Simulated Categorical Data
cat_data_mcar	Simulated Categorical Data with MCAR
cat_ord_data	Simulated Ordered Categorical Data
causalDisco	causalDisco: Causal Discovery in R
CausalDiscoSearch	R6 Interface to causalDisco Search Algorithms
confusion	Confusion Matrix
convert_tiers_to_forbidden	Convert Tiered Knowledge to Forbidden Knowledge
cor_test	Test for Vanishing Partial Correlations
deparse_knowledge	Deparse a Knowledge Object into Knowledge DSL Code
disco	Perform Causal Discovery
distribute_engine_args	Distribute and Validate Engine Arguments
evaluate	Evaluate Causal Graph Estimates
f1_score	F1 score
false_omission_rate	False Omission Rate
fast_iamb	IAMB Family of Causal Discovery Algorithms
fci	FCI Algorithm for Causal Discovery
fdr	False Discovery Rate
forbid_edge	Add Forbidden Edges to Knowledge
g1_score	G1 score
generate_dag_data	Generate Synthetic Data from a Linear Gaussian DAG
ges	GES Algorithm for Causal Discovery
get_tiers	Get Tiers from Knowledge
gfci	GFCI Algorithm for Causal Discovery
grasp	GRaSP Algorithm for Causal Discovery
grasp_fci	GRaSP-FCI Algorithm for Causal Discovery
gs	GS Algorithm for Causal Discovery
iamb	IAMB Family of Causal Discovery Algorithms
iamb-family	IAMB Family of Causal Discovery Algorithms
iamb_fdr	IAMB Family of Causal Discovery Algorithms
install_tetrad	Install Tetrad GUI
inter_iamb	IAMB Family of Causal Discovery Algorithms
knowledge	Define Background Knowledge
knowledge_to_caugi	Convert Knowledge to Caugi
make_tikz	Generate TikZ Code from a Causal Graph
mix_data	Simulated Mixed Data
new_disco_method	Add a New causalDisco Method
npv	Negative Predictive Value
num_data	Simulated Numerical Data
num_data_latent	Simulated Numerical Data with Latent Variable
pc	PC Algorithm for Causal Discovery
PcalgSearch	R6 Interface to pcalg Search Algorithms
plot	Plot Method for causalDisco Objects
plot.Disco	Plot a Disco Object
plot.Knowledge	Plot a Knowledge Object
precision	Precision
print.Disco	Print a Disco Object
print.Knowledge	Print a Knowledge Object
recall	Recall
register_tetrad_algorithm	Register a New Tetrad Algorithm
reg_test	Regression-based Information Loss Test
remove_edge	Remove an Edge from Knowledge
remove_tiers	Remove Tiers from Knowledge
remove_vars	Remove Variables from Knowledge
reorder_tiers	Reorder Tiers in Knowledge
reposition_tier	Move a Tier Relative to Another in Knowledge
require_edge	Add Required Edges to Knowledge
reset_tetrad_alg_registry	Reset the Tetrad Algorithm Registry
seq_tiers	Generate a Bundle of Tier–Variable Formulas
set_knowledge	Set Background Knowledge to Disco Method
set_knowledge.disco_method	Set Background Knowledge to Disco Method
sim_dag	Simulate a Random DAG
specificity	Specificity
sp_fci	SP-FCI Algorithm for Causal Discovery
summary.Disco	Summarize a Disco Object
summary.Knowledge	Summarize a Knowledge Object
TetradSearch	R6 Interface to Tetrad Search Algorithms
tfci	TFCI Algorithm for Causal Discovery
tfci_run	Run the TFCI Algorithm for Causal Discovery
tges	TGES Algorithm for Causal Discovery
tges_run	Run the TGES Algorithm for Causal Discovery
tpc	TPC Algorithm for Causal Discovery
tpc_example	Simulated Life-Course Data
tpc_run	Run the TPC Algorithm for Causal Discovery
unfreeze	Unfreeze a Knowledge Object.
verify_tetrad	Check Tetrad Installation