0efd5532aef6ce0c1eb8e541e8fa482e *DESCRIPTION
15d87f8d4ecfd954c8dd3fc2b69a0cbb *LICENSE
bf30ab6565b567fad97c2f7291d066b7 *NAMESPACE
73c6f6ea1b6059b067d4642cf8b72666 *NEWS
261b09be00cb2f0ca0bde3aa8d2f8600 *R/add_basic_meta.R
b1acd21560ce746b3fa1e33346c1d4d9 *R/add_characters.R
8a3742fe5e603f306cef2a96ae1e9b8e *R/add_meta.R
5cd943276adbf9f17f5230085652e9e9 *R/add_namespaces.R
a42db5ed7e78b983aa7d4cae3927f87b *R/add_trees.R
f4b327981b2104ea7f458bf521e74176 *R/character_classes.R
ba78e9c2f0cfb82233f7a013ddc9c54c *R/classes.R
eeb4a688d49a71b887d4720a1730174d *R/concatenate_nexml.R
274e5b1d797295c940c51dae5cefab3f *R/get_basic_metadata.R
e8782b9236887d860328a284b880fabe *R/get_characters.R
003fb16feefaf0fd999ec9a1224a0602 *R/get_metadata.R
fe892d1d2be5fff56f37b24e89515f87 *R/get_namespaces.R
3673b507fcaf82a0f6059b928a873ccc *R/get_rdf.R
7a33762833a0441de7b1ac1d99504023 *R/get_taxa.R
3a890d1b39f18a08b0f4c7d94fe0d57b *R/get_taxa_meta.R
323a810bfdadcb830fd013011d4c40d4 *R/get_trees.R
f8c0a9c2cec4bcbde80170ee767eba13 *R/internal_get_node_maps.R
2c2f1c91251d019f03d99e61c62c42cd *R/internal_isEmpty.R
3372a2273979f5336464963d70fb710c *R/internal_name_by_id.R
9b3a7e3552acf23cf0193363a7644397 *R/internal_nexml_id.R
71a4b1b132719c58e5c5d7b4d8bc919e *R/meta.R
a0eb07febda79bb9019c22cc1de272bf *R/nexmlTree.R
8e1b70f3620578164ee69c83abaae05d *R/nexml_add.R
eaf388a4f6baa30b25470711aae80073 *R/nexml_get.R
8c9aa039421b472839a151b9c95ea5c5 *R/nexml_methods.R
698d35fd50103663a04d673b73644aa8 *R/nexml_publish.R
63e9cc50076b19cc883d4d3ebae0fa48 *R/nexml_read.R
6344b75e9c36dc71ec67c33924665a52 *R/nexml_validate.R
65c9a3302510e8c4ff1dda23d6fb5ce6 *R/nexml_write.R
691f6b77eebe2825451557bd60df28e5 *R/simmap.R
7b7d400236ab6cfa6fe179224f9fa20c *R/taxize_nexml.R
c93e2f5c704b5b8a03e4805a8ee73d1f *README.md
871fdb95c93175d44b06b4bd28b548eb *build/vignette.rds
3a5cfbbc09833527ce902eb774db5a80 *data/simmap_ex.rda
b2e0de0418b8c0fa9efed1fa5475a534 *demo/00Index
5bb8b588882878ecd86680b26e79a5e9 *demo/sparql.R
1a28b2f979b57f24d26ed796049bc9f2 *inst/doc/tutorial.R
cd3ddf51edba0ad3449afd17679eda4e *inst/doc/tutorial.Rmd
2f8a679273ccb8d0d1e933a42bf697c8 *inst/doc/tutorial.html
2de44d2898c22479b8a449767f1ab627 *inst/examples/RDFa2RDFXML.xsl
64a60bc7b825e88ba931e1da5fd08e28 *inst/examples/biophylo.xml
41cf6116441773694f8f32b88900d346 *inst/examples/characters.xml
7cfba1e69724dd93fe4a07525e419ed4 *inst/examples/comp_analysis.xml
835c4ec3a29a2a08be861f44d445fab5 *inst/examples/gardiner_1984.xml
d3a3d2519dcc6fe7b5399061db69f1d9 *inst/examples/geospiza.xml
84cf7d2d949b6a36df18bec31d4c8917 *inst/examples/mbank_X962_11-22-2013_1534.nex
727f60b2ff7bdae76ffc09452937107f *inst/examples/meta_example.xml
34b804a9a1187689fe223be6498dcd26 *inst/examples/missing_some_branchlengths.xml
2fc3d9aca072a9964a95de8a8d7e6d53 *inst/examples/multitrees.xml
e34f32b1c48ae0acd8bfab2f09971945 *inst/examples/ncbii.xml
200927eaf3dc24fd97bd607277693992 *inst/examples/phenoscape.xml
cb142aadc75b48b696ccf6d42637ff72 *inst/examples/primates.xml
1f52dfb1306c9ed696d14f805e95a498 *inst/examples/primates_from_R.xml
065eae0c3189850bcff9d838b5041f90 *inst/examples/primates_meta.xml
a64c177eae6be033dd8712e6d693b2ea *inst/examples/primates_meta_xslt.xml
8a8e3e961583a94cec32852e9b4d36e8 *inst/examples/simmap.nex
327200ae849ba639f267e42d04932aa0 *inst/examples/simmap.xml
d1740a7345534477c40477f0fc776ad7 *inst/examples/some_missing_branchlengths.xml
e49283485e7dec7c98f77c54cf6406bd *inst/examples/sparql.newick
74361320b5d4bc935ea9d09a35463708 *inst/examples/trees.xml
e13e266bacbb7285ed5893df2d5c7e12 *inst/simmap.md
b089aef00cf70d40c4c1be4530fcb7a1 *man/add_basic_meta.Rd
cecb15f7c8204f4d5b7f48804384dccd *man/add_characters.Rd
ccb0addcad5a41b45f11005f710dac0e *man/add_meta.Rd
4fee2a332dbe7271b823835bb8d550b6 *man/add_namespaces.Rd
3bfae0a79c990b74da159d47b8c9092f *man/add_trees.Rd
0450f71a57b6c46e8929e9749b5249ee *man/c-ListOfmeta-method.Rd
5bc16e3c6b8ed3dad3dec57f19e020e4 *man/c-meta-method.Rd
f217c7a4bf9bcec44bf9c101444e7ac1 *man/c-nexml-method.Rd
458a49c5cafa8e021e85f3cca8f31a04 *man/flatten_multiphylo.Rd
bb410f5bc905c14f02c6200cc9716f96 *man/get_characters.Rd
7f96a034d9b932fbfbfb8f81eca86122 *man/get_characters_list.Rd
8a1f0ddb99f9376b1f581dedaf74834c *man/get_citation.Rd
239fe542573e335c600537aead3e05b8 *man/get_flat_trees.Rd
a4ae4a9f9944fc271a22c0f7ee08e442 *man/get_license.Rd
d294dc090b5a089c0c93757d7c092034 *man/get_metadata.Rd
91bdac0895949c59a79c6ae56d30d594 *man/get_namespaces.Rd
ae45b1feb1c8eff1860e15781d35bb6b *man/get_rdf.Rd
52bddddb9c2290741d472df9066e7168 *man/get_taxa.Rd
fc73d61a5b570412f940808ba3b5fc82 *man/get_taxa_list.Rd
74a9b99af50b4d43fe0a50baab8f312d *man/get_taxa_meta.Rd
5d336c187be9ef8e069e263628117457 *man/get_taxa_meta_list.Rd
f736389cea9d5f964021ba2d820b2f1a *man/get_trees.Rd
3c2d03d28e5d58b6ebadede4560f7a5f *man/get_trees_list.Rd
ffeffced086a56564e414421b80b1feb *man/meta.Rd
acae23986242841befcbbc98bc7a8828 *man/nexml_add.Rd
621a671cc621b5336703d85ab5bade89 *man/nexml_figshare.Rd
3436dc88971886f517b244276212111a *man/nexml_get.Rd
caea61c308ea4908b3f717627afb0d04 *man/nexml_publish.Rd
73d258b1c5293b7a493d7c0e6f8a839b *man/nexml_read.Rd
55eae8923be948cb8fdbc42710d0fda9 *man/nexml_to_simmap.Rd
db75b80cd3351efcfefdfb4e9c949a43 *man/nexml_validate.Rd
089164da300514ed009b97a44e5df538 *man/nexml_write.Rd
d3f7d300a9209f12b1a4e73d22309f8e *man/reset_id_counter.Rd
e13a1c45ac15b045c3ca30844b94676b *man/simmap_ex.Rd
acaf4c2f29c7142c8153ae6364994d3a *man/simmap_to_nexml.Rd
2f4cc6262f03abe88dc342cfc9ce0286 *man/taxize_nexml.Rd
0986fb01a818285a18db33f3ddebd829 *man/toPhylo.Rd
551d50ad04df803cf5a8979a11cf1c26 *tests/test-all.R
d669197af0a711820322c0416a0b2717 *tests/testthat/conversions.R
168ac6bab2b3b0e746112db9da4a272f *tests/testthat/geiger_test.R
232821401dcf38f522128f9d439b4755 *tests/testthat/test_ape.R
ebd7918ff14f8addfcda68b0a959c93e *tests/testthat/test_characters.R
c76fb6b361c8a6583a96b18640a00283 *tests/testthat/test_comp_analysis.R
4f339642ea822f53472b7f1388a74ef6 *tests/testthat/test_concatenate.R
3c4a917e4e2dd0d3414ea67269d6cbbf *tests/testthat/test_get_characters.R
172d598697c8d1fa25bff17914001161 *tests/testthat/test_global_ids.R
0d0e9289ad11f3cd8db3f9ba96c6ccbb *tests/testthat/test_inheritance.R
bb896ea403a5f6e1b5ce4cef52fc69e9 *tests/testthat/test_meta.R
ab4965318e5a77be2984d72b1845e4d5 *tests/testthat/test_meta_extract.R
7b2d585de4c229f7621cce878ad52c2a *tests/testthat/test_parsing.R
5091f801f732ca932e6114a703f492a5 *tests/testthat/test_publish.R
de8c8e9f3d60a41e861a1ab091d72023 *tests/testthat/test_rdf.R
4ba0ef04250fcbdef77433c116b64af9 *tests/testthat/test_serializing.R
30288b0ce184e754f6f68b91987e14f7 *tests/testthat/test_simmap.R
f589a334279fb435aac4aa5cb644c22e *tests/testthat/test_taxonomy.R
400472357a41ce552a0c9f2ccf362b02 *tests/testthat/test_toplevel_api.R
016144531ab5b1b1d52dcde47bf0af5d *tests/testthat/test_validate.R
3c00fa8a1d9507f11afb0cf8b3295bc4 *tests/testthat/treebase_test.R
d6d5740807968854bc0ae96d74ada3c2 *vignettes/Makefile
39e93959870e05a889efc54e41755d4a *vignettes/figure/tutorial-unnamed-chunk-4.png
cd3ddf51edba0ad3449afd17679eda4e *vignettes/tutorial.Rmd
c93e2f5c704b5b8a03e4805a8ee73d1f *vignettes/tutorial.md
