51a3ba43bfcec24ab1ed908ca6e6b273 *ChangeLog
db625122a87ee9036e4baa3b9f136c11 *DESCRIPTION
b0858e1fa0a0f18d1b725d3b1f8acf80 *NAMESPACE
42bceda38fcd3a9312f5ef63ca862ef0 *NEWS
42bceda38fcd3a9312f5ef63ca862ef0 *NEWS.md
4971801a9ac36b125e22e3f98343a285 *R/DendSer.R
42f2e43c0a45d3196b4c8b0a261e9336 *R/all.equal.R
2184561aede77ca531c87af7a384d158 *R/ape.R
3495fb9c6b4e9a1bad8a6aff518e2e05 *R/as.dendrogram.randomForest.R
b631e5714eae2b10de39a01f0a9bfe4f *R/attr_access.R
f855ea4a3e27bdd263e163c65b24e5f1 *R/bk_method.R
d2644a001cb53ecd1087d4d6a5afc80a *R/branches_attr_by.R
d96e029f2d3e404f7cf38089960d6319 *R/circlize.R
eaca5f3cc7b737bd52b01d9cfc244723 *R/color_branches.R
fbf8eb34127a187816097c3074c11f08 *R/colored_bars.R
929e22c58963301893b531f236020167 *R/common_subtrees.R
e5ea594254dfd1da1d4c54d865421030 *R/cor.dendlist.R
d02c1024ce19db268099a8d604fc8ac2 *R/cor_bakers_gamma.R
70446c4786689680604b59041fa4cd70 *R/cor_cophenetic.R
0d642fdd46da14d3f41a719bbc51ed50 *R/cut_lower_fun.R
ae9a17e3c8f48aa1dd3b9f5088022a06 *R/cutree.dendrogram.R
fe1a822ff559fe5d68a253670b053974 *R/d3dendrogram.R
2391c478c3c132b28e39839777f8b5c8 *R/data.R
63cfb66c3f406ab15c4fd25112bd9e71 *R/dendextend-package.R
dd0e962d4130adc7cb7dd3c9d899ffa4 *R/dendextend.R
4507cd4bf6ee7fd416ed31b49bab0586 *R/dendextend_options.R
7b6686edda7bd2d90f89298ee6c1c6d1 *R/dendlist.R
52d790844090c1805d13037b79d9bd12 *R/dist_long.R
e0b2b95d471b8aae8aceecde85922b67 *R/distinct_edges.R
0ccb2d39df1b1475aaf46a437ca79c9c *R/entanglement.R
f47fb9d9df8d3bf8365a41c98e37abb9 *R/find_k.R
d04809f5b2b591b2dceedcf97320f6d0 *R/get_nodes_xy.R
588eb27990f28518539b8a5c221ed446 *R/ggdend.R
352033a2d0a57aad0647b1bb43676a4c *R/ggdendro.R
26a0617ab3c2d018dd1518c00121641b *R/is.functions.R
83c13a38ca03f60f6a5314921f89472f *R/labels.R
b74d490e3c12e20deae47b30281ac1a5 *R/labels_colors.R
09ffc6217773058fe8b3eb02ac85206e *R/magrittr.R
edd59920c50a8d83f6985489b2da4b7e *R/nleaves.R
17719f5bb1f804c561d59b7d76b2b5fc *R/noded_with_condition.R
f9cced80511a9dc82ff91854ebfbeea5 *R/prune.R
2cac6662a6b5b9528223836b6b538c37 *R/pvclust.R
0961900a7aab9a08a9a3b13a9c9b6816 *R/rainbow_fun.R
a3e6cb041e20e7c85536cec89764f68d *R/rect.dendrogram.R
4ad9b9c00c5231af1589d1c7d862a8b6 *R/rotate.R
25388cfb4e65f671f034101646399e12 *R/sample.dendrogram.R
94f6c84d78eb27bdab6b5ca25032415e *R/seriate_dendrogram.R
cd042209cf0e4040a32a7978287fa81b *R/set.dendrogram.R
19858a8a8db3551e584e9abfa86771e1 *R/stats_imports.R
fc83f0132233464361627418f38c7d67 *R/tanglegram.R
f4682c4035a1b0312d1c79c0817530af *R/unbranch.R
d0bf97fa6cab8a200a865af8a3669207 *R/untangle.R
218114ac73c3ea451027414e24c94dcb *R/zzz.R
3f5030315e0dbbb36b41a10bf42eb557 *README.md
c56e28125916b5063e57ce82b15669c9 *TODO
1dec05da32479a6b3ae478298f696cb7 *build/vignette.rds
d0af280fd8f27bd7bce228c54e1a964f *data/khan.rda
92fa46325b81a7cec7f0407f2008d9fa *demo/00Index
743aa74e33a1e4f83b7f155dd678c69b *demo/dendextend.R
b1018d31ffd8d4ccfdeaa6f848183e2a *inst/CITATION
5e336b0f38ef7a5ad3d340f9bd7be161 *inst/doc/Cluster_Analysis.R
46afca8b5e24f4e8648bc0793094ebb5 *inst/doc/Cluster_Analysis.Rmd
b98b0f4c01cf7f11f41b1efbc804ff59 *inst/doc/Cluster_Analysis.html
0eda31214436819d9b974042327babee *inst/doc/FAQ.R
8a3743f3e5c505f5a663c4e15dc28823 *inst/doc/FAQ.Rmd
1d7bac2079cbf2bfc809cdcf9f1caddd *inst/doc/FAQ.html
f19ddbcc801569ead71a30743fa28f40 *inst/doc/Quick_Introduction.R
58a748a98f3dfed4b6cb9979679f1460 *inst/doc/Quick_Introduction.Rmd
75243f1e987a4de58566396731c3f5f6 *inst/doc/Quick_Introduction.html
c77336316fc431675dc7f0dcd5f19529 *inst/doc/introduction.R
25315dee41f4b1d52c323e6fd0c0c901 *inst/doc/introduction.Rmd
f9defe01f4bbf140dae150e0567ab60d *inst/doc/introduction.html
cac9695f89e1cece5994dec491e31bb3 *man/Bk.Rd
3b7557b4878dcba87bd3f3968387417e *man/Bk_permutations.Rd
8ef1315e89415ae4ee9b8caf80cdb844 *man/Bk_plot.Rd
d815f1313b9aaf6d1b519334f9a11eb3 *man/DendSer.dendrogram.Rd
c618db21ccfd1730fa6c54a5b1939edb *man/FM_index.Rd
02b8f2dd1699074d884e728c4006af4a *man/FM_index_R.Rd
62e442c2c97dbd68e511662c9aa58223 *man/FM_index_permutation.Rd
f128455e20e2f7a44fa7a378695bde2e *man/FM_index_profdpm.Rd
5702dc3c11729da94c13cca940d70271 *man/all.equal.dendrogram.Rd
c0fb84989fb045a956b25d16332e091b *man/all_couple_rotations_at_k.Rd
4afbe98eb9e344bf475b8d6aa41633c2 *man/all_unique.Rd
77cc6c92de5f3b98c718c82051030a13 *man/as.dendlist.Rd
06a9d154ee3c78c72384c82774b93441 *man/as.phylo.dendrogram.Rd
0a289534429dfc5a447c170078592346 *man/as_hclust_fixed.Rd
8d608a3e54ca9a1d4070c5ab4ca9c3c5 *man/assign_dendextend_options.Rd
4cc5004ab0d4926fc566f4e3765a5a65 *man/assign_values_to_branches_edgePar.Rd
0efc1ce022e38bf067d6569e18185eab *man/assign_values_to_leaves_edgePar.Rd
07d55a4ee7375a4655ae80d170c21010 *man/assign_values_to_leaves_nodePar.Rd
e013cf70cfccc4a68f6f37471205b8a7 *man/assign_values_to_nodes_nodePar.Rd
bf76395d737aceaf7b86256efbc945a9 *man/bakers_gamma_for_2_k_matrix.Rd
8bffdef9ebf9097b8d57fcafb33bad2f *man/branches_attr_by_clusters.Rd
303177941a1ac0d2a42c9c0ad4066715 *man/branches_attr_by_labels.Rd
c2f3d2fa491f21ec1edd221430ba3d22 *man/circlize_dendrogram.Rd
7d3f55987e46f4cef1e1fd9dae6c6e4f *man/click_rotate.Rd
25186343365c95a44b8dc4bddad02494 *man/collapse_branch.Rd
33da26c858df081fdad1c9778de36248 *man/color_branches.Rd
01f0a71689d00ff0aabf5d7e7316aa6f *man/color_labels.Rd
6ec0211f5c0079990fddf557816ab237 *man/color_unique_labels.Rd
1f705c003dfc752d9bbe4c3b2aa91483 *man/colored_bars.Rd
dc1e1f9bbf9da494ebe61da3e2c3463f *man/common_subtrees_clusters.Rd
bd8d7b23ac8f9142266fd731f126a4c0 *man/cor.dendlist.Rd
3372157df83eeb396b2e561e1960ba43 *man/cor_FM_index.Rd
488969e09a50fbd8b3176293c807a27a *man/cor_bakers_gamma.Rd
bd158bb68774f7bc070619b0f94505bf *man/cor_common_nodes.Rd
cc31885e211de2215e3cd0aa7d7f6cac *man/cor_cophenetic.Rd
40c8f0649680eb6bb88df1a4435590f6 *man/count_terminal_nodes.Rd
b36c09c96769bf9498c8208700cee6dd *man/cut_lower_fun.Rd
47601c3835f303938a5b6054ae907506 *man/cutree-methods.Rd
40776ba4f82a07df74ac1dcbd2803e92 *man/cutree_1h.dendrogram.Rd
6d0e9481b9c2c2472909b6bbd91e6eff *man/cutree_1k.dendrogram.Rd
de80bf7b262da7d31d89d26dfb5853de *man/d3dendro_options.Rd
aaa885d56a4b1bdae9d6a6da744aa8bd *man/d3dendrogram.Rd
2df4c6cbfaf50c1d868a8493572f76dd *man/dend_diff.Rd
f933901039c121a4ef03bfefbd62332d *man/dendextend-package.Rd
d4aa59ec87685af35f79340356677932 *man/dendextend_labels.dendrogram.Rd
4e1b51ded960eda3d95f301dd11adfc7 *man/dendextend_options.Rd
0f1921d4a1622c4e4784172967a55d01 *man/dendlist.Rd
4de292c3f1c2f6515b56541923b48d76 *man/dist.dendlist.Rd
6d3fe6d2452f0f00a05b18da102c71d7 *man/dist_long.Rd
206e05a9130b53e6b9190c4f4e33848a *man/distinct_edges.Rd
57a377dd8fd39e63b86a0c1a07243a38 *man/duplicate_leaf.Rd
ffc46f6dede7fb555c689bfd0de5039b *man/entanglement.Rd
57d8dc2a1027bb57f33f73b3c661cc07 *man/fac2num.Rd
fd9074977d250ce4b3f90807f2a4b736 *man/find_k.Rd
8801853b22e0f59efa262b24d7b69026 *man/fix_members_attr.dendrogram.Rd
54b2b0a02d8091881f1e605a149a6488 *man/flatten.dendrogram.Rd
523ac7de4771be95fb94158be8af3c1f *man/flip_leaves.Rd
01cea41c2d1753b00e9c286a7fe2dbb2 *man/get_branches_heights.Rd
1a6dfb87747d49be6322a1ffa7d8375a *man/get_childrens_heights.Rd
74626810bdb7b0bb86c1a5dc32dc46a3 *man/get_leaves_attr.Rd
18a7534875153b2ee89706be001d1cbb *man/get_leaves_branches_attr.Rd
0b2affdd00aab0a3b652c16ca264ca8e *man/get_leaves_branches_col.Rd
417083564b119485151ce74e89b1a21c *man/get_leaves_edgePar.Rd
29ed94c9792cff4833c6467edad4396f *man/get_leaves_nodePar.Rd
ee23be8bde5385b524c7f75bac9780f3 *man/get_nodes_attr.Rd
71cf11a58dc3e8d268976ebccf344622 *man/get_nodes_xy.Rd
0a6d516aa974564919eac178040eb326 *man/get_root_branches_attr.Rd
87fc0b74e03da099b4dd760c4af959f2 *man/ggdend.Rd
e870eaa98d1f99c47b2ccaa9b9d3df40 *man/hang.dendrogram.Rd
e4e8baf969ab7e9aa09fad49ac12fcda *man/heights_per_k.dendrogram.Rd
5e85b2141b74bd1066ffb6a5fb385543 *man/highlight_distinct_edges.Rd
67d56faaf17dd5bdfd6295619d988738 *man/identify.dendrogram.Rd
ea7ecfa81a63b8988a17ff5e7ad27317 *man/intersect_trees.Rd
1f9160af2176821162f8976a903b3f15 *man/is.dendlist.Rd
24ced5e273c3ac67a19a373940864f9c *man/is.dendrogram.Rd
fce7d8f2c20ddc78d3c78be18285f2e5 *man/is.dist.Rd
96d7044636cc104554b408da3a54bda9 *man/is.hclust.Rd
f1dd72f58a298bbc354aac37d4f98394 *man/is.natural.number.Rd
5e8710025d2a3c5dc9acb960304582ba *man/is.phylo.Rd
b990c8b4e87cbc6567ef4d6f46dbec36 *man/is_null_list.Rd
9563df1848ae81b3a729f26c193d7454 *man/khan.Rd
f9fe839a6259a403ccd7e6403c45b3a8 *man/labels-assign.Rd
23f2e5d2a2693ab6e310eebde2b2d3ce *man/labels_cex.Rd
d0a89e9d3c19a7273440dc03cbc720b3 *man/labels_colors.Rd
088eb7938964e424c2bf11c1d4b1300c *man/ladderize.Rd
34b5977d89a5d95b0dbd368ed33d8439 *man/leaf_Colors.Rd
77f4e75a57353de4f9e4e498bc25ce0d *man/lowest_common_branch.Rd
a043e87d4a8cbda898edfb43a75c99a0 *man/match_order_by_labels.Rd
9065a7532ec88636137728682aac0003 *man/match_order_dendrogram_by_old_order.Rd
5073f17606cdd4ee5b2577a8b38daaad *man/na_locf.Rd
a9c37a7795fd6e8427c183c2b8aa7405 *man/nleaves.Rd
fd15eee0dfb24c06470b396adf264c39 *man/nnodes.Rd
607215c125a0270bb6194f9076a4c2ce *man/noded_with_condition.Rd
db4f807ca8bedcdf9054137ab9a1a78f *man/order.dendrogram-assign.Rd
70e9186c151e87ee7e57f7b5f29f85fe *man/order.hclust.Rd
d43c9fe8053dfa555ff36fdca83fbb44 *man/partition_leaves.Rd
f06362ca0a49f6f7a265884d3bb71689 *man/plot_horiz.dendrogram.Rd
26abfc778959274b2795187cfd7ea60b *man/prune.Rd
03ae4bd65e18e9f7b0540072104a8dc9 *man/prune_common_subtrees.dendlist.Rd
d47cd5f38f6ef1352076ab1e6596ab94 *man/prune_leaf.Rd
54eb4ed54d31d4c82544f16287cd975a *man/pvclust_show_signif.Rd
5833daf4395bb7dff5170c5480446a98 *man/pvclust_show_signif_gradient.Rd
235787307b79d76fc0d84330b6da054d *man/raise.dendrogram.Rd
c31a13c129fe8a1538e6a97feccc2df4 *man/rank_branches.Rd
ec198c62e52bd4fd24094d4de27a5a8b *man/rank_order.dendrogram.Rd
421e90625df55f64882fac6e68256b93 *man/rank_values_with_clusters.Rd
0cbc1d3bf054959300b5fef6d386f89b *man/rect.dendrogram.Rd
989e78bb422f54ec30e6333fc3f75336 *man/reexports.Rd
5ca003a0b074631f0a688ea4ce45402e *man/remove_branches_edgePar.Rd
f43accc66d1ead55fc2a1c221d8f0ec7 *man/remove_leaves_nodePar.Rd
bdd7a4ce925987c85aac18aa709b0dfa *man/remove_nodes_nodePar.Rd
cd286764310b15a4eda21a71c677389d *man/rllply.Rd
d6f2c551bb1208564bf9c80a4ed0c94d *man/rotate.Rd
a96d37c04338a4c60a121c76d10318f2 *man/rotate_DendSer.Rd
db97c2ab7747e4dff548732efa7fb91f *man/sample.dendrogram.Rd
100b87d727da20a11f7336f9df8426f4 *man/seriate_dendrogram.Rd
e02eba1c38309a2558797b2e268a1deb *man/set.Rd
b80fc6d484cc2415677fa0a465badf28 *man/set_labels.Rd
6337e57a9f5bf86cc4d56bc9648a01b5 *man/shuffle.Rd
f751595d097a6ef21e816965763bb780 *man/sort_2_clusters_vectors.Rd
3de523ddfed7c6ea091f079052679953 *man/sort_dist_mat.Rd
b0196d733a82c50633567e0b7c8dfeb2 *man/sort_levels_values.Rd
3fec61ecc3eff6a4e2a1b16256c4fd28 *man/tanglegram.Rd
e7440f8dfb05a582fd5eeb02810a3823 *man/theme_dendro.Rd
766a1ed4670cc26c7270979ae0e1b167 *man/unbranch.Rd
f0149df667a594d30e367fa12797aedf *man/unclass_dend.Rd
3fe23bbe40871373eb0ab1d203b7b66a *man/untangle.Rd
8e29c126b27f7366ed20dfd71630386f *man/untangle_DendSer.Rd
9059c76d37b0a87fbbcd3150d0eba80f *man/untangle_random_search.Rd
14d39f6cf1368645aad41f33920c5982 *man/untangle_step_rotate_1side.Rd
6376418e8e0328335d19cf82b307ea46 *man/untangle_step_rotate_2side.Rd
395d3bb89760e781137421b615842d62 *man/which_leaf.Rd
fa2039fda6ec1f1b2267acce997477b7 *man/which_node.Rd
f307da3abcdc1b3a930e992b867ea04c *tests/test-all.R
3fc1ad368da546dde59d9630bbaf2340 *tests/testthat/test-attr_access.R
15a8db613d9fef017eb6d3c8c7e6c823 *tests/testthat/test-bk_method.R
708ef1d2cc0a35c536c74789b4d12a1d *tests/testthat/test-branches_attr_by.R
eb411945019ed6d0cdeb3bef1af9fa0f *tests/testthat/test-common_subtrees.R
d762cca7d6a1e0ba887a64759db704e5 *tests/testthat/test-cor_bakers_gamma.R
94425fe2fd96c76419fb58e1aaf04be3 *tests/testthat/test-cor_cophenetic.R
e530cd2c316e192284e50d4f3343ed71 *tests/testthat/test-cut_lower_fun.R
8f618748191fa839bef9025c00bef6a4 *tests/testthat/test-cutree.dendrogram.R
1cf742325b4533a2f72eb818fe918a19 *tests/testthat/test-dendlist.R
8007665b1605fe5beffec535219aa399 *tests/testthat/test-distinct_edges.R
325643754c938a95da53f1bd514dd464 *tests/testthat/test-entanglement.R
be4d34c7873534ed0b3020964d3dfc7d *tests/testthat/test-general.R
0bfe559db9102be222beaa7dfac4b264 *tests/testthat/test-ggdend.R
e666543d674163de4fc4f819329e7501 *tests/testthat/test-labels-assign.R
3f8087e22dc4a648e831d260c071d142 *tests/testthat/test-labels_colors.R
bf6f295e5e4b3a399ec5ddf94c4294dc *tests/testthat/test-nleaves.R
3d014cd64d8d50164a05dcc7fd8c01e0 *tests/testthat/test-rect.dendrogram.R
76125933d2918585bf80dfea409eac67 *tests/testthat/test-rotate.R
4f935acb4df7acfc106f91f0df3bf503 *tests/testthat/test-set.dendrogram.R
c174552a50356afcff18ca05ab3b31e1 *tests/testthat/test-trim.R
29f2f7cd4a7035c7ed6af885a244d491 *tests/testthat/test-unbranch.R
066d5439f91d1c957b4d93ff48ba94a9 *tests/testthat/test-untangle.R
46afca8b5e24f4e8648bc0793094ebb5 *vignettes/Cluster_Analysis.Rmd
8a3743f3e5c505f5a663c4e15dc28823 *vignettes/FAQ.Rmd
58a748a98f3dfed4b6cb9979679f1460 *vignettes/Quick_Introduction.Rmd
712d5487a885e01e82646078a374ca29 *vignettes/disabled/dendextend-tutorial.rnw
25315dee41f4b1d52c323e6fd0c0c901 *vignettes/introduction.Rmd
