19cc35c707ce3efc0795de521a6a7baa *DESCRIPTION
307d8da2f0d716dd4a92573cf61e110d *NAMESPACE
d70287282e1c2b5beb06f3b7f63da807 *NEWS.md
d12dbb4ba3890cc82f501aa53e09dc2b *R/RcppExports.R
f8fccce164da63c6e6a7d264c615c67c *R/annotation.R
afc16a6657654aaee6640c4dcfcfa941 *R/clonality.R
0f535e2a931a7c8c129440ceb6e74444 *R/clustering.R
2e7c3ceba3a7ac4e8f4341bc8b7db1c3 *R/data_docs.R
60cdee302c36094feb0916c1a24baf93 *R/dimensions.R
ca331147fa6df35dbfcf02de626ad81f *R/diversity.R
1e2438ce2e528ea19a8a2fb84ed6fb97 *R/dynamics.R
05efb96afba867937a23b53c0501e644 *R/explore.R
bdf233504b794d9eecf6a3a99da9532c *R/gene_usage.R
dd62e748e14b23742a65e2a5d4bfe64d *R/gene_usage_analysis.R
cb42a9cce4e1b1de806b6c82d1d4d0ba *R/immunarch-package.R
fbd4bb8e456fa6c5c620e61aaacc71e7 *R/immunr_data_format.R
af967de6027c26a3d289e6a9923d94ae *R/info_theory.R
8ec4ac6e65a14f936ba7d8fbfdb4c025 *R/io-parsers.R
db6d3a7604806e3a2522358714e3d662 *R/io-savers.R
e568753a0d46454b49c8ea0efaaa8f7e *R/io-utility.R
5fde6fba761e20d3af21d2ce5dbecf95 *R/io.R
affef64bc56bb12707ad3038dff08754 *R/kmers.R
5f2d21dabc16acf9fecbb21f9e993b5e *R/overlap.R
36a5f855deed9a9ef2b03fe3a46f8b8b *R/overlap_analysis.R
f4c3ccc0637fbe68c3a961a2ba2fa886 *R/preprocessing.R
bc15cb48779caa5f5fc0d55a5edcfe0e *R/public.R
7f0b80956a0efc42c9bf3462557634ba *R/sampling.R
75228515b4c1e51a3695feb65069b9fe *R/shiny.R
3a6a44b60693bf54ebdf20bad6e752ae *R/singlecell.R
5ffc82054bb2dd70de14a0b7355fd8bd *R/spectratyping.R
61e94a77dfdadb2692bfe5284c3bf229 *R/tools.R
6865c222db73987e179bfa0d96ae5d2e *R/vis.R
6aeb7ee439a282faaed2b72ed3262eb7 *R/wip.R
f4f2a606fceadbf6062e82f1db9b8c6c *README.md
14716b4b8dff52a27ea2e60071f3858c *build/vignette.rds
00ae2aa3427adcc0d025a35ad5621d53 *data/aaproperties.rda
ea5a2af608ae4caefa4bc532eda78d5c *data/genesegments.rda
f7b4bab78a87432206cbe41f1d08e9c0 *data/immdata.rda
64f722e1bbdc5b5c0fb49b7ee38121d5 *data/scdata.rda
5fc7b5023cbffac9802563b24141166f *inst/doc/v1_introduction.Rmd
2c7545b5b88398708dfde8d93987f628 *inst/doc/v1_introduction.html
949df2d684b15e57e66ef5dc6ccb1aba *inst/doc/v2_data.R
b51e0cc174a4afd6943bb7251010cd2b *inst/doc/v2_data.Rmd
ce0af67bb8186318d4a698f0fcb0e42a *inst/doc/v2_data.html
332170ff9e10e7ccb5be6aeffc63d44c *inst/extdata/db/vdjdb.example.txt
c08390039a6e33fedd08342ba1b68071 *inst/extdata/io/Sample1.tsv.gz
b2a32ed785986eeb3094e86f22a40310 *inst/extdata/io/Sample2.tsv.gz
25f02ee5566a800604a1ef0a278461bd *inst/extdata/io/Sample3.tsv.gz
d4ae13e57fcf4c4b101a8cc8bbe8175d *inst/extdata/io/Sample4.tsv.gz
290577e5d5766171e1bfb7096bbcede8 *inst/extdata/io/metadata.txt
9e45583b294271871d1bd262d5629d44 *inst/extdata/sc/flu.csv.gz
53b91ddbe26edac8addd409f5dbb9320 *man/aa_properties.Rd
f597218a9d9fc0fd6faf26fecab3ed5e *man/aa_table.Rd
924ef9d8fe15384b27667215c0af6411 *man/add_class.Rd
14f09d34cca5323535c2a25d4fcd6228 *man/apply_symm.Rd
81f5ca05da102629a899254a4755f594 *man/bunch_translate.Rd
f98ef5d9c10cbd3256791d636cc639bb *man/check_distribution.Rd
ec1e96a7782444db62a8c42da3e6f8be *man/coding.Rd
2309ef2f82cc963571c55eacd3d98d03 *man/dbAnnotate.Rd
a14e9ab64bc4df4a89406aacdf81cbc2 *man/dbLoad.Rd
ef4cf6eb1a31f90f31bef8e631fe849f *man/dot-quant_column_choice.Rd
dedd449bf88a4fab8957dda48dbde458 *man/entropy.Rd
605ee83f041b9510bd2b56a057554908 *man/fixVis.Rd
811ae91b089135aa7b38eb515becbe95 *man/geneUsage.Rd
fffb92f8ce5be1bd1603de67a5891960 *man/geneUsageAnalysis.Rd
45157ce56d78957bd391a0a6058633e8 *man/gene_segments.Rd
f6eda2d1282b817e5176f754e15fc87e *man/gene_stats.Rd
81c9795e88b035899b55a6376092292f *man/getKmers.Rd
86e96f0b1e3ac0220e00a1fd30cb5b7f *man/group_from_metadata.Rd
7e06128ecde5283a387f57242774fbab *man/has_class.Rd
cda534d26907efb4c11a8bab4fd637cb *man/immdata.Rd
77d33eba1525f55078039a15b6e5b320 *man/immunr_data_format.Rd
ff0ae1010e4eaffc19482529bf63f0f6 *man/immunr_hclust.Rd
ed93cb196a99cc3525cf23247b5e8d5e *man/immunr_pca.Rd
f4c49b4504768398fc8f5c204d4c9e19 *man/inc_overlap.Rd
fe2739054688d2d28746d14ef8a1ac01 *man/matrixdiagcopy.Rd
9ee648365ca5b0f88d96e7fb587a880b *man/pubRep.Rd
6889703bd21cb55ebc7b287bd83dbd91 *man/pubRepApply.Rd
c8f74b1380f1903676bbe7c87c19f8c5 *man/pubRepFilter.Rd
ab76b408317953bc2bb8c5c06830ddc4 *man/pubRepStatistics.Rd
088be921bc492060041099e4fef515bd *man/public_matrix.Rd
db05e114fc43298534ebc87bc21abb6c *man/repClonality.Rd
7e036fb078439faaf31243fdf58a28cd *man/repDiversity.Rd
e905c8d848256e411ab2f9b44d6539e9 *man/repExplore.Rd
84738b4d08dd898d6dc7ed71a276735d *man/repLoad.Rd
9e10b063898ddfe36a932a0c9ac1e9cf *man/repOverlap.Rd
845b3bb0671562cef45b24e2618dba9f *man/repOverlapAnalysis.Rd
fa38125daa87ab21cad773afea3125c1 *man/repSample.Rd
19d45eb838cb0cdfef43f98bb95faad9 *man/repSave.Rd
91af2438b93561b31bd35a2e13725504 *man/scdata.Rd
bce5e2b13a2b3e88d267027e96d1498a *man/select_barcodes.Rd
26587f691eb83b4c59bbbf73d76e370e *man/select_clusters.Rd
12c1a574d119c90c76e1138fe85e2afb *man/set_pb.Rd
1518624d8920ea372f8d81c18b4d4133 *man/spectratype.Rd
a8cf365bac554e27d997e48bbb7082f8 *man/split_to_kmers.Rd
c83a424b534c0331ec2cfd845394f107 *man/switch_type.Rd
87f0f4872d80df4b71570250463cdc3c *man/top.Rd
76432d4d8394e7d65998a3d6a6a141f9 *man/trackClonotypes.Rd
2990c10057fba4d56b75115628a27e52 *man/vis.Rd
4e2fa36013bab8c255c7e3fe76208da1 *man/vis.immunr_chao1.Rd
c4b740ae3a4e0f0018158d68d19d2946 *man/vis.immunr_clonal_prop.Rd
912f613aab8ed5bccb32a12fd4f7fe14 *man/vis.immunr_dynamics.Rd
a665bcceee85ab3a00922a1d9fc5f22b *man/vis.immunr_exp_vol.Rd
7b2e9aa1c9521570d9c242e15972fbd4 *man/vis.immunr_gene_usage.Rd
63a25860050e649a6b48406f8165e94b *man/vis.immunr_hclust.Rd
73c25761223a38ab72858bcb1b13732f *man/vis.immunr_inc_overlap.Rd
6d0764463f713de6d9a3c8f0ea7c101c *man/vis.immunr_kmeans.Rd
8e46717089fb78bf6239b1e7539ada3b *man/vis.immunr_kmer_table.Rd
4cc5526a5cb543bdc8b676ab98370245 *man/vis.immunr_mds.Rd
587d294979b6bdcefd0b3b0abe91f7d3 *man/vis.immunr_ov_matrix.Rd
69a781f8c763c57b4e332872199bdb5e *man/vis.immunr_public_repertoire.Rd
39f37e977cf5c2c3b93ef382aab1808e *man/vis.immunr_public_statistics.Rd
d92659c027dd37bde851804e907aba9b *man/vis_bar.Rd
37cb141bbe686e29283a98734a2d99ec *man/vis_box.Rd
1a1d65b28d60e2f8c23bf320a6dbb8b2 *man/vis_circos.Rd
00ae54643159545b73b323ecc2317575 *man/vis_heatmap.Rd
f856e7924d5e7612a6a40bba9723efd2 *man/vis_heatmap2.Rd
5a3c19b48f1b6a06a02241e3bc5eb8da *man/vis_hist.Rd
f02b92a6502c4f7ace2b64e62247c606 *man/vis_immunr_kmer_profile_main.Rd
56585d15ae08c637aef49b2502f387bb *man/vis_public_clonotypes.Rd
5e29f8e01adce70da51f22a7a93fcdc7 *man/vis_public_frequencies.Rd
88a66c8d825ba4617d1053e672ad639c *man/vis_textlogo.Rd
02311efc5116fe08796d4894a1be644f *src/RcppExports.cpp
d6fe6d2e88a8bda3a957fe8efaddc9cf *src/fill_functions.cpp
5fc7b5023cbffac9802563b24141166f *vignettes/v1_introduction.Rmd
b51e0cc174a4afd6943bb7251010cd2b *vignettes/v2_data.Rmd
f5e2ade1a7dc6dcce958d011780fc8ce *vignettes/web_only/community.Rmd
166f2ec5720b7f99ea8e75ee878e3d5d *vignettes/web_only/load_10x.Rmd
b964b10f29eb04d6d1ae86fff828556f *vignettes/web_only/load_mixcr.Rmd
1929392ce0920917d51c7231678e691e *vignettes/web_only/v10_prop.Rmd
65365f99fbf59a4cc8a63ea071f7c50f *vignettes/web_only/v11_db.Rmd
71cb863e82a7fc50496c44ee352707f1 *vignettes/web_only/v21_singlecell.Rmd
64424609984ebce012be09c56373358f *vignettes/web_only/v3_basic_analysis.Rmd
a25a011867718501ca6dc3a2ff784732 *vignettes/web_only/v4_overlap.Rmd
7be924c89f32132851334718d3256c48 *vignettes/web_only/v5_gene_usage.Rmd
2b3340085594c1c24e6db69034404fac *vignettes/web_only/v6_diversity.Rmd
4cfe57a14d015a784429587d48bb73ec *vignettes/web_only/v7_fixvis.Rmd
89d43fdcf98780fc7a3a9a1ca27cbf3a *vignettes/web_only/v8_tracking.Rmd
4b02c3990394e3da0549dba08b75e877 *vignettes/web_only/v9_kmers.Rmd
