# Generated by roxygen2: do not edit by hand

export(inDAGO)
import(bslib)
import(ggplot2)
import(paletteer)
import(shiny)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,width)
importFrom(Biostrings,BStringSet)
importFrom(Biostrings,encoding)
importFrom(Biostrings,letterFrequency)
importFrom(Biostrings,quality)
importFrom(Biostrings,readDNAStringSet)
importFrom(DT,DTOutput)
importFrom(DT,renderDT)
importFrom(HTSFilter,HTSFilter)
importFrom(Hmisc,rcorr)
importFrom(R.devices,capturePlot)
importFrom(R.devices,eps)
importFrom(Rfastp,catfastq)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,filterBam)
importFrom(Rsamtools,indexBam)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanBamWhat)
importFrom(Rsamtools,sortBam)
importFrom(Rsubread,buildindex)
importFrom(Rsubread,featureCounts)
importFrom(Rsubread,subjunc)
importFrom(S4Vectors,FilterRules)
importFrom(S4Vectors,isEmpty)
importFrom(ShortRead,FastqSampler)
importFrom(ShortRead,FastqStreamer)
importFrom(ShortRead,ShortReadQ)
importFrom(ShortRead,alphabetByCycle)
importFrom(ShortRead,countFastq)
importFrom(ShortRead,encoding)
importFrom(ShortRead,narrow)
importFrom(ShortRead,sread)
importFrom(ShortRead,trimEnds)
importFrom(ShortRead,trimLRPatterns)
importFrom(ShortRead,trimTailw)
importFrom(ShortRead,width)
importFrom(ShortRead,writeFastq)
importFrom(ShortRead,yield)
importFrom(UpSetR,upset)
importFrom(XVector,open_input_files)
importFrom(bigtabulate,bigtable)
importFrom(bsicons,bs_icon)
importFrom(bslib,sidebar)
importFrom(callr,r_bg)
importFrom(checkmate,assert)
importFrom(data.table,fread)
importFrom(dplyr,all_of)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(edgeR,cpm)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,exactTest)
importFrom(edgeR,filterByExpr)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmLRT)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,normLibSizes)
importFrom(edgeR,plotBCV)
importFrom(edgeR,plotQLDisp)
importFrom(edgeR,readDGE)
importFrom(edgeR,topTags)
importFrom(fs,path_home)
importFrom(fs,path_temp)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,dev.off)
importFrom(grDevices,jpeg)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,replayPlot)
importFrom(grDevices,svg)
importFrom(grDevices,tiff)
importFrom(heatmaply,heatmaply)
importFrom(htmltools,HTML)
importFrom(htmltools,br)
importFrom(htmltools,h3)
importFrom(htmltools,h4)
importFrom(htmltools,h5)
importFrom(htmltools,h6)
importFrom(htmltools,strong)
importFrom(htmltools,tagList)
importFrom(htmltools,tags)
importFrom(limma,makeContrasts)
importFrom(limma,plotMDS)
importFrom(magrittr,'%>%')
importFrom(matrixStats,product)
importFrom(memuse,Sys.meminfo)
importFrom(methods,as)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,parLapply)
importFrom(parallel,stopCluster)
importFrom(pheatmap,pheatmap)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(readr,read_delim)
importFrom(readr,write_lines)
importFrom(reshape2,melt)
importFrom(rintrojs,introBox)
importFrom(rintrojs,introjs)
importFrom(rintrojs,introjsUI)
importFrom(rtracklayer,import)
importFrom(seqinr,read.fasta)
importFrom(seqinr,write.fasta)
importFrom(shiny,addResourcePath)
importFrom(shinyFiles,getVolumes)
importFrom(shinyFiles,parseDirPath)
importFrom(shinyFiles,parseFilePaths)
importFrom(shinyFiles,shinyDirButton)
importFrom(shinyFiles,shinyDirChoose)
importFrom(shinyFiles,shinyFileChoose)
importFrom(shinyFiles,shinyFilesButton)
importFrom(shinyWidgets,dropdownButton)
importFrom(shinyWidgets,prettyRadioButtons)
importFrom(shinyWidgets,switchInput)
importFrom(shinyWidgets,updatePrettyRadioButtons)
importFrom(shinycssloaders,withSpinner)
importFrom(shinyjs,disable)
importFrom(shinyjs,disabled)
importFrom(shinyjs,enable)
importFrom(shinyjs,hide)
importFrom(shinyjs,show)
importFrom(shinyjs,useShinyjs)
importFrom(spsComps,shinyCatch)
importFrom(stats,as.dist)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,prcomp)
importFrom(stats,var)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tools,file_path_sans_ext)
importFrom(upsetjs,chartLabels)
importFrom(upsetjs,fromList)
importFrom(upsetjs,interactiveChart)
importFrom(upsetjs,renderUpsetjs)
importFrom(upsetjs,upsetjs)
importFrom(upsetjs,upsetjsOutput)
importFrom(utils,capture.output)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)
