3e789bfcb64f119ba80adfb973268425 *DESCRIPTION
5d82e9946ace180a66d2fe6db26780f1 *LICENSE
f9e1441155a11b7fa7ee9f24bf1c892d *NAMESPACE
4d32d6381507c30fe8d6131d062dc8b6 *R/RcppExports.R
13bb7bf0b9f511756ad0d75f731d1437 *R/calculate_gene_rank.R
c6d322165785a8fa5b40ffa0f41b6806 *R/data.R
76cbd68f7e69288be92677538cf12a51 *R/import.R
16da2d1c57bf20a310ad66f21a7a7f0c *R/inferCSN-package.R
f8cab300784fce93ee5135726020a2a4 *R/inferCSN.R
ff3d84fa6fa2346cd80a0924164abd92 *R/network_sift.R
ec6342e56f8954d6f031e045c4a9a9b1 *R/network_visualization.R
87ac8ad3cab9fe33d00a3ff3733810e8 *R/performance_evaluation.R
b82cd50939cd6dcd46e71725e5f57500 *R/plotting_functions.R
6303d29173c35ba5c3fbc0b2e74c9d98 *R/sparse_regression.R
e02510b03874a4c26da2287a81bfe864 *R/utils.R
05a1f1ed4d2a62a860db90d8165e28b5 *README.md
c865cc831c3370c46b93efe15036051c *data/example_ground_truth.rda
7876ce105fe62fea51999bf207905aab *data/example_matrix.rda
e14e9b714f5e7617ed2c4b727cc48e34 *data/example_meta_data.rda
00828100132119ea5d1e0a04fc8e8d68 *man/as_matrix.Rd
5c56b4d8f4e7c6f4c05eb62e545e6dd1 *man/calculate_acc.Rd
61265595cca3a2df641a1a990d603e8a *man/calculate_auc.Rd
c7abcfceaacb7157e5be47745a845686 *man/calculate_gene_rank.Rd
b761516b7523845b884fba1d9fcac20b *man/check_sparsity.Rd
4a56d2f38d64ecacc924907015e406a8 *man/coef.srm.Rd
bea92ebfc3cc63a4375cd260d58a1e42 *man/example_ground_truth.Rd
369f179d33e62b3546d42b46591e907d *man/example_matrix.Rd
4395d138df2bb37a4603150b74963ca3 *man/example_meta_data.Rd
4cde6e83b2d3b96a27c12cd1ba8e0091 *man/figures/inferCSN.svg
59e13bbcf63a9e9fdd8780892fca93a9 *man/figures/logo.svg
69694152e106caa26b78933776de6e13 *man/filter_sort_matrix.Rd
9ab8dd6b1d26c3ca9c7433ebf6c333dd *man/fit_sparse_regression.Rd
4ae3b6c9559bab218182cae20417290f *man/inferCSN-package.Rd
d16cb91266d94e8d466aa876e3078238 *man/inferCSN.Rd
a76770dd35e1251eb96b87665e5c52c0 *man/log_message.Rd
8f1cdc477872d5da361d7686dc98021d *man/network_format.Rd
e5347a6e836d3231bce3492883ba6baa *man/network_sift.Rd
aa2e17bfe2c83665ad862ce1ea01998d *man/normalization.Rd
6e84d34d3eb74b800db1de6316b20522 *man/parallelize_fun.Rd
c232000512890b4a0d6127a4d9ff8b3a *man/plot_contrast_networks.Rd
4cace9266a9ada89ca7910e2a4dfa8f3 *man/plot_dynamic_networks.Rd
de7b8d59cbd94ee69120409166829e4a *man/plot_embedding.Rd
73cef0fb6203dda1e08ca2d4d50557be *man/plot_network_heatmap.Rd
71766b78acbbec12d2f43a7b6dfea5dd *man/plot_scatter.Rd
f9fd36545d5ccbf43cba0b642b7ddb24 *man/plot_static_networks.Rd
66f36184077e993ea9f4b73fb7d859c6 *man/plot_weight_distribution.Rd
d046214e9fb82b3fb91de3fd29926e10 *man/predict.srm.Rd
b5cfb2aeb559443cc93e8e259c8a2001 *man/print.srm.Rd
e097fb0f834bfc70cd722f45cfba9529 *man/r_square.Rd
d57c8ecc3b060a72bcbcbb2902a98785 *man/single_network.Rd
6942192c55242aa3efee4ee95be16df7 *man/sparse_regression.Rd
b5c1bfbfb89e83a8f13d51f36417571f *man/table_to_matrix.Rd
5cb69c03e60e7fb586a1e86dc9143813 *src/BetaVector.cpp
06ba7ebc00f85103556d4ea1aad966ad *src/CDL012LogisticSwaps.cpp
5facda43a9947cfc31458c4f4a55c23c *src/CDL012SquaredHingeSwaps.cpp
b5a09bddd72266cdfd07be93429d0335 *src/CDL012Swaps.cpp
12645d3077f2a8d871ac11bf86c93629 *src/Grid.cpp
973a36de2365067b5b5c0533674b4a28 *src/Grid1D.cpp
5ccf7648fb6b2ab9c2ce67d1ba4e9902 *src/Grid2D.cpp
56ca939d5a0195ba528a40a33ed94115 *src/Interface.cpp
5a59c8342f64ee0f58b0b1c1153a2296 *src/Makevars
e3677cd42a05775075dd2249bbe044b6 *src/Makevars.win
5b6b236b9fcf107a7e232fd6ba79e59e *src/Normalize.cpp
fb4a4c530f1b5a36f9f9e2d060a90b18 *src/README.cpp
b388946acfb35ee8308d940c9fb4d1b7 *src/RcppExports.cpp
9708933fff3a1b9dc04f7a5c77676fd3 *src/Test_Interface.cpp
21d114bd5c3a9dda6496ab9412c54949 *src/asMatrix.cpp
c033a9e748471e05aa7d0c6db8a02112 *src/include/BetaVector.h
80dc26f1c70b47b3fd44d82d8b962638 *src/include/CD.h
7a08babf994026bcdbd11aa3b812e2ad *src/include/CDL0.h
fbdc0eb44fb7e72c56d7fd052fbd82be *src/include/CDL012.h
90fe3b904570cdaa5401f27d6e93a8b6 *src/include/CDL012Logistic.h
e0a011fb2ac0a52fe4a47d806edc1d81 *src/include/CDL012LogisticSwaps.h
180d00ca694c90251b188e6f504bc674 *src/include/CDL012SquaredHinge.h
759c838d8aaebb128f3e68991e9747fb *src/include/CDL012SquaredHingeSwaps.h
b6f39446bcb5b8d30c7ff592a57dfe05 *src/include/CDL012Swaps.h
3c65caa73f70506f9914640898d13c6a *src/include/CDSwaps.h
4697e52978ac34c0fee2e9da15a776ad *src/include/FitResult.h
5a554a2ac4d140b77cd116dfd8711af1 *src/include/Grid.h
f5c085c78607a76cefd8ea0cca276b28 *src/include/Grid1D.h
4ab2f96aed44bd9022066fab7203b21d *src/include/Grid2D.h
bd52b5e74753724e50c8da6e468f991b *src/include/GridParams.h
e0869fa83acbea00b605b7bf81f6a1e1 *src/include/Interface.h
deee7d81e16e0bdb18a173d7e68b1e4d *src/include/MakeCD.h
89ce36fe039c4fd4bffc259ec7d0b663 *src/include/Model.h
747b844b6bcd0fdf62dbb2409ba7ac9b *src/include/Normalize.h
317fd5f523c4cd06306133d223eb9eee *src/include/Params.h
6a4a4368696e4f099155f049fe449a6c *src/include/Test_Interface.h
6161fb790b643c8582bf8102261fff35 *src/include/utils.h
636e5f5c0b28ed0d1ef17622d2564489 *src/tableToMatrix.cpp
173eb9db03fc11457ba0e1f0ec8e63c6 *src/utils.cpp
