51bd2d058c6ce0172ceb616f0c91538d *DESCRIPTION
2a2bf2d22d2ee7163335f1535cc3d264 *LICENSE
2bb89d6b62fcf5832983ab544cc5ad2c *NAMESPACE
9e1930256595981dcaccdba9369a1658 *NEWS.md
199b160967a213c6039de385e5d62129 *R/applyQC.R
208dfcf9f14268b2a6b380fd52e11027 *R/individualQC.R
88276c000eed876445cfc0f1099d6ba8 *R/markerQC.R
1b479f05dadea652039d7781e92b83c6 *R/plinkQC.R
b32578327fb4fed8b792139c23395563 *R/utils.R
1d241a266532c1973650c1a99b717e8d *README.md
7c04afe7d6943d1237ff566b0837ca24 *build/vignette.rds
eac0c99523f6ac12d51424b5fe3185e7 *inst/doc/AncestryCheck.R
0b64c85b86712e75249626411438c163 *inst/doc/AncestryCheck.Rmd
907f578aef9462aa70deed58f775ef66 *inst/doc/AncestryCheck.pdf
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349e63cb077cacc9c789bee1182f6699 *inst/doc/Genomes1000.Rmd
5cb720301d0e721c997248927b1a4111 *inst/doc/Genomes1000.pdf
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072df86f49d4e58864b8420d3ee22d34 *inst/doc/plinkQC.R
402bbe6b3dc8e682c7bb0be8bbe2ddf6 *inst/doc/plinkQC.Rmd
9124bdfeca623c56bc635ab1df12a16a *inst/doc/plinkQC.pdf
c321532c2963a36376c7be2ea8eb40a3 *inst/extdata/HapMap_ID2Pop.txt
7f71cda36fe7af3ace03013be8e18848 *inst/extdata/HapMap_PopColors.txt
701eb84786937dfe5af10d154c8e3a55 *inst/extdata/data.HapMapIII.eigenvec
5a2e018e96ea392df95e814ed2caed35 *inst/extdata/data.bed
502970642c8b1b63c86d199d76691de1 *inst/extdata/data.bim
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47a12d88d879c865f12a1043a07e9e77 *inst/extdata/data.genome
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0031f5408c958423a1e8ccc9e114bed2 *inst/extdata/data.sexcheck
3bae3da0be2a4e5aceab362b13346496 *inst/extdata/high-LD-regions.txt
fecff00ad97a2859d3d43d1832154d12 *man/checkPlink.Rd
cf5926c31be4a6cdda5f453e678e19d9 *man/check_ancestry.Rd
51b7cf581c6d4179c428433dfd0e7d93 *man/check_het_and_miss.Rd
cd519c221f535ba62afb087932e82f96 *man/check_hwe.Rd
01efdfb78578f7780b87588d881318fd *man/check_maf.Rd
c4f576276ac0ccb7163acbab5cfe2b3e *man/check_relatedness.Rd
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19162775c065da1a9789f70288915c21 *man/check_snp_missingness.Rd
0f590952a63ea7dd8023d9f2ecc9f225 *man/cleanData.Rd
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cd5932f36ec5b43045560255155200bd *man/overviewPerIndividualQC.Rd
5c4d54ed43496f47013faf1f935b9a70 *man/overviewPerMarkerQC.Rd
26d33806634f94295c95739f5e9c6edd *man/perIndividualQC.Rd
567007e6b57d47943fe850f1f4c1cf7c *man/perMarkerQC.Rd
a145eb8b7d9da9bbe370033693d0ad66 *man/plinkQC.Rd
250dab0471c5325ce92e0a19615df598 *man/relatednessFilter.Rd
22296190b384c7b71c6c6bf2eee3ee18 *man/run_check_ancestry.Rd
ba691c0550bce5ec4ed5f0d2ee8ca539 *man/run_check_heterozygosity.Rd
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2aee862bc3ffea29ee07acb2b252cf8c *man/run_check_relatedness.Rd
feb50664180e691dec3cdf23da13fa9d *man/run_check_sex.Rd
b1ba65254eed243d49282748b988ff28 *man/testNumerics.Rd
c321532c2963a36376c7be2ea8eb40a3 *tests/testthat/HapMap_ID2Pop.txt
7f71cda36fe7af3ace03013be8e18848 *tests/testthat/HapMap_PopColors.txt
701eb84786937dfe5af10d154c8e3a55 *tests/testthat/data.HapMapIII.eigenvec
5a2e018e96ea392df95e814ed2caed35 *tests/testthat/data.bed
502970642c8b1b63c86d199d76691de1 *tests/testthat/data.bim
069cb534a261daf899a179291141c726 *tests/testthat/data.fail-IBD.IDs
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fe483e4e9483d5fa889da5e83ec4ec50 *tests/testthat/test-applyQC.R
578836884514e3a0a85629393bb39684 *tests/testthat/test-individualQC.R
3342eb09a66b2fa9d8cc6cb4c6def7d8 *tests/testthat/test-markerQC.R
0b64c85b86712e75249626411438c163 *vignettes/AncestryCheck.Rmd
349e63cb077cacc9c789bee1182f6699 *vignettes/Genomes1000.Rmd
55b7ece982dc5f7883966ebe2b3401ae *vignettes/HapMap.Rmd
d5e6b3b2dee8149485f2c9822446e6e6 *vignettes/Rplot.pdf
40fbf087a404a803925781f1699a28e8 *vignettes/checkAncestry.pdf
119a4f9a93e46b678662d154449cffd1 *vignettes/checkHetImiss.pdf
ec3aa9bc9e9bf694a1cc33a7621315b9 *vignettes/checkRelatedness.pdf
1d57a9a60e64f0fc36eaa55ad3ff2c66 *vignettes/checkSex.pdf
b7fbe30d27a02a2a5f066e3807f00692 *vignettes/hwe.pdf
a9f88cf94885e415c5d4ccbbc241ecf7 *vignettes/individualQC.pdf
367273bc2d20b49bec5f737601fb2b99 *vignettes/maf.pdf
f1dfcc88c2f2a43dde4fd95969afbd05 *vignettes/markerQC.pdf
8d978719632ab46b5663d8beae5bde3a *vignettes/overviewAncestryQC.pdf
7896b20e2b69d9d47596b2a7d8a913f7 *vignettes/overviewMarkerQC.pdf
634ab61035b449d92d776c467dc00329 *vignettes/overviewQC.pdf
402bbe6b3dc8e682c7bb0be8bbe2ddf6 *vignettes/plinkQC.Rmd
2c678b25dbe4823676bd308c323565c3 *vignettes/plos-genetics.csl
d4189cbd7128ea5721b796e5e6605154 *vignettes/references.bib
46ba4c61b176bf348367bdaf55dc897d *vignettes/snpmissingness.pdf
