a5aefa636f00bba69089c3eb9353fd3c *DESCRIPTION
fc939894becfc6c12e7729fc6e0e53d7 *NAMESPACE
93c3782a2775e74b8ec08555cec11571 *R/Non-Exportable-Functions.R
f7e51b96f9a45445f886c9395fecf4fa *R/aa.R
700ee4ccdaf516c6b8476e7954004c74 *R/abundance.R
00c62e6b8fce57b7eb387d76ae31487e *R/accdpx.R
e7013955f069316cdebb3a5fbd0f8ea1 *R/ddG.R
de590967b7fc4804bb5bff6417c90cc8 *R/distances.R
a786669567f3851daeed60a13fe0320e *R/dssp.R
23debc1826390b2de21ca6cd845eb413 *R/environment.R
cbc43304c04bbf8b6ffb34dc5b1cae45 *R/evolutionary.R
c7903a25cba9ed29a16650097bb99377 *R/getseq.R
e41f87fec93838bba96b46b5ed399e40 *R/go.R
e410484508ca33f3203bbe7aee0c3230 *R/hmeto.R
64661288caa3d299b1fe091990118519 *R/metosite.R
cb071b86c3be9eb0b2f16a6a1a100882 *R/pdb_ancillary.R
99490a654fe362670da285cda893cfac *R/ptmScan.R
d18af3a974d57c22e3a4e4e29a7406cb *R/ptmplot.R
2bbb6cef4404ffbf855e99aaa322a4ba *R/saromatic.R
cdf947640195389adc181b1e37c0cb89 *R/sysdata.rda
47c72bac537fda40b63d865cdd7b36ab *data/hmeto.rda
01a6f7b2534967d0772be8bd52a80888 *man/aa.at.Rd
bce8b3aa4ac8d2df7a2df1d2c118622d *man/aa.comp.Rd
75796ae7b6008735a451e82e1fb989b9 *man/abundance.Rd
6c542451cf19eaac812685882e501c39 *man/ac.scan.Rd
8e98402dd3215e21f2c56f6d09893506 *man/acc.dssp.Rd
8cbfb12166e892cf8242bef8275e0739 *man/atom.dpx.Rd
e75777ee9d139b7bddf6c6ecdf8cd9ae *man/ball.Rd
a2725f49d29eff92bd5c4d14d43fed9c *man/bg.go.Rd
ace1f2a3a39247a74999b19bd4166e1c *man/compute.dssp.Rd
aea1e72a715f15a710a8e6a22b0ecd4c *man/custom.aln.Rd
75f3d79323803e6d7ab84869c59670cb *man/ddG.profile.Rd
4b6678d86938f85f7e496d7efadc5f21 *man/ddG.ptm.Rd
f2debc303ee2f9ae782e1786eb937ab0 *man/dis.scan.Rd
188f29d8aaec894cf0ffdf0fd31f68fa *man/dist2closest.Rd
50d80ba50393fa4a908e607ae680999e *man/dot-get.exepath.Rd
be03be18efbb18fb6291b9faae7ae518 *man/dot-get.url.Rd
b8ab44d7bd762ca6ea75417decc00779 *man/dpx.Rd
e0a826b71f12a079d66d383229cd7cc6 *man/env.Ztest.Rd
4a5f39a37a38f9d5225d94480a3d4ed1 *man/env.extract.Rd
5967bc98418303a084fc1a9679433fee *man/env.matrices.Rd
7d135625fec276cac4eb23deb3ca6a59 *man/env.plot.Rd
1c2ab19cd0daa27a42304687dd0c3b90 *man/find.aaindex.Rd
ccbddc384e3b36577eeedfac74b7436d *man/foldx.assembly.Rd
6dfa4176418fdb7f1f4bce019abd1577 *man/foldx.mut.Rd
b4d58fa028ffa87620343bcb6db9e3d7 *man/foldx.stab.Rd
78932d415789c078730f07162ead43c6 *man/get.area.Rd
84ad4ff9739c27ee802f678320221e4e *man/get.go.Rd
dac45f4ae8f9b24a4abc1db64f01713e *man/get.hssp.Rd
6a1b94d4f6e2b6784f003338dca0d029 *man/get.seq.Rd
fe16ff83b92d6375ac51d9eec2d089dc *man/gl.scan.Rd
a7a9e2eabf693898c9c8105e9c694576 *man/gorilla.Rd
42e75903bec81f04de01a6bef9cd0b83 *man/hdfisher.go.Rd
8d220755f3d135e8e1fd2f7b2cdaaf0c *man/hmeto.Rd
f81bcdca9dd54d72d5d6be22ba07dd28 *man/id.features.Rd
2588ff942b2d8ca6e0c0fc78baf92b26 *man/id.mapping.Rd
f64cad3f88b0a9108525b97686207283 *man/imutant.Rd
86d38c3abcc06d1a753afa523fc3caf3 *man/is.at.Rd
df98782159f58fd2eb1a15201085b415 *man/list.hom.Rd
dd40f9f28ed2b8306b3feaead359727e *man/me.scan.Rd
b04e4b8899c20f4f15e3cb942b8d809a *man/meto.list.Rd
d9b3141c3dcc98b26a71607d49b373cd *man/meto.scan.Rd
237db264e8867003688935dcef6c5102 *man/meto.search.Rd
8c61f610b24ebda2b948d331ab46c5a5 *man/mkdssp.Rd
9c6d60a2926d650233e4f54fb86b5284 *man/msa.Rd
b4fdc7403d584930270b43fb88e5ec0e *man/net.go.Rd
9f8ff9bb70d9cdcf9df1dfbcfa2cafa7 *man/ni.scan.Rd
23dc77bee61ebb53e53f507b5d7e7f9f *man/p.scan.Rd
4959a6ede06862f329b35b210f30ac58 *man/pairwise.dist.Rd
1102299bb7e16f9d04c7f1119f97b2df *man/parse.dssp.Rd
8c1da03583bda82282933ca08bc7f06d *man/parse.hssp.Rd
b0f93c1938c76bb2f8639f96b8c058bd *man/pdb.chain.Rd
8547e1a6dab3ea24bd5cd63aa76fecb1 *man/pdb.pep.Rd
18f654cbe4182b28aac7bc5521c6c384 *man/pdb.quaternary.Rd
3a727de8dc4673644fe6438a24e6dd98 *man/pdb.res.Rd
2eef356a439fa0ea5309a63245b4a326 *man/pdb.select.Rd
a2dfab5e8ffa545a5ee27a68328cd61c *man/pdb.seq.Rd
65d004f5f4adccea75c457eeb6491d02 *man/pdb2uniprot.Rd
60bb31676c1e4d600748f313d5b0bc80 *man/prot2codon.Rd
ff308c12f06aba6ccf833fe2f752b7c5 *man/ptm.plot.Rd
22cdffb35a98ebb55ef4c406ab64f27c *man/ptm.scan.Rd
99258e8bd7612663f1aedffb4fc637b6 *man/reg.scan.Rd
fbd40ef1aff64c009dc92e2701b39e2b *man/renum.Rd
31576f37adf6dfabae9aaf5be40220ef *man/renum.meto.Rd
ea6a55f71ecf4ee94600cd632007ec8d *man/renum.pdb.Rd
e961596d075fa07d416de194e1aa4d14 *man/res.dist.Rd
ab4d48a31b8e43d904ad485b5a327714 *man/res.dpx.Rd
bbc07662aba79a8f0f7053df1716d980 *man/saro.dist.Rd
837c4e9cc86aab7910c35d443eeaaa61 *man/saro.geometry.Rd
ca33814da68bda2e814ea457e738cb05 *man/saro.motif.Rd
1d6e311d25ccbbabf052be870b26f9cd *man/search.go.Rd
5652e67c999279bbc4360772e43989c9 *man/shannon.Rd
1bdd30b9a43c174cf721b503fca865ab *man/site.type.Rd
d9ef71c8a6be25faa5c0479d6a88135e *man/sni.scan.Rd
25e13006e66c2b17e3e951434059c1b3 *man/species.kegg.Rd
d76bb1617aa0c7d73d290c198bdfde43 *man/species.mapping.Rd
38d8a8b53c57a71f4e01af3fece4d417 *man/stru.part.Rd
2455c7b56e8524a94b32d4c82e4d7c5f *man/su.scan.Rd
cf024d5d066d86bc200e41635597a805 *man/term.go.Rd
60c3298b232ca1a43f00e52196f73652 *man/ub.scan.Rd
3673727947d1c4ccaacd80da8b2a0167 *man/uniprot2pdb.Rd
8660a8a7e13c1396ba3a8fce204ac59e *man/xprod.Rd
495088438c04630b5f6d76598ad6a230 *tests/testthat.R
e98b6fe0e8ab484f2860206bb9d1295c *tests/testthat/Rplots.pdf
93089c847ecf50129480160bfbff5d0d *tests/testthat/Zplot.png
868f01bcfd9f61a375be9bef29469469 *tests/testthat/go/GObackground.txt
64823b4da7b1c2e9a03e87cf790818e5 *tests/testthat/go/GOvivo.txt
a4d9553804b6327ab8bc29c4e644c585 *tests/testthat/go/id_set.Rda
cd61be61ef51b23475bce239a525e6ee *tests/testthat/go/id_set.txt
93089c847ecf50129480160bfbff5d0d *tests/testthat/myplot.png
670895774df60808d52dab0ebe7f0fa4 *tests/testthat/pdb/1U8F.pdb
4527784025c9252fee48c569d7bf0678 *tests/testthat/pdb/1b4i_MetO-Q29.pdb
2851d82568dd0ed3fe191968ffabd0c6 *tests/testthat/pdb/1b4i_MetO-T29.pdb
b2d68a0fd3707b3866f9c8c0289379d8 *tests/testthat/pdb/1b4i_Repair.pdb
1d6d55582d4afa25afa8b04dcf93c1fd *tests/testthat/pdb/1b4i_pSer15.pdb
ce705d62cc155997e0d0fe2c3762a040 *tests/testthat/pdb/1b4i_pSer8.pdb
08e23a2da20b7b3a381fce6ad9e4cfdf *tests/testthat/pdb/1b4i_pThr21.pdb
2f724aee4d1b42e752961e9deeb42e77 *tests/testthat/pdb/1b4i_pThr23.pdb
834f8cb88c1f4e3c33b999737fa7a1f7 *tests/testthat/pdb/1u8f.hssp
dc401a25e4d7d049c81da18c8794ceb8 *tests/testthat/pdb/2dfd_Repair.pdb
7cf92dd528e6df92d413b1cbf018870d *tests/testthat/pdb/Rplots.pdf
6a2f44170275457b591ee6597285bee5 *tests/testthat/plotptm_cache/scan_G3SB67.Rda
11bbc3ad51bd134f762e018000e7910e *tests/testthat/plotptm_cache/scan_P09803.Rda
999832a2b9cc46a0ad11e6f274d1999d *tests/testthat/plotptm_cache/scan_P18031.Rda
48fcf795b631e0399a198e2948b9e601 *tests/testthat/plotptm_cache/scan_P23246.Rda
df7d25b77b3c5c22f476d474b8f526a2 *tests/testthat/plotptm_cache/scan_P84022.Rda
144423db344e0cc503d3deaac0cb9b24 *tests/testthat/plotptm_cache/scan_Q01196.Rda
1cd07c9775d2f3e7f536f4d16d3d8d31 *tests/testthat/plotptm_cache/sse_1H9D.Rda
56862865054e8b790f863790b8e5cc88 *tests/testthat/plotptm_cache/sse_1I7W.Rda
17f5e388a9c7947231427d098755cd58 *tests/testthat/plotptm_cache/sse_1cmo.Rda
b3ff888e8d84226782b0807ab59ee0b3 *tests/testthat/plotptm_cache/sse_1u7f.Rda
39abf851ec65b024fb482cd5a01540b0 *tests/testthat/plotptm_cache/sse_2cni.Rda
e1424c6d16ea7749d6cabe2e79c6f532 *tests/testthat/plotptm_cache/sse_3q2v.Rda
031b9ce4789ced8d38c5bda88ab47bda *tests/testthat/plotptm_cache/sse_4wij.Rda
909de418f0150d1a65564f6e306e9d7c *tests/testthat/test_aa.R
5743a59d2b2a41816990a8e8b8f2fc0f *tests/testthat/test_abundance.R
9667bbb84887eb4ae0760fa9310ebc53 *tests/testthat/test_accdpx.R
dfbce21a515bb9c23a8d54920534eba2 *tests/testthat/test_ddG.R
6e391688670db6bd931d3e9b6484bc41 *tests/testthat/test_distances.R
f55b3bbe7fb2bcf9007a01e964860864 *tests/testthat/test_dssp.R
771d9a1b806304b4990f9a995f169bac *tests/testthat/test_environment.R
2f57f38a5ae8dabf9a4ba6ada20fd543 *tests/testthat/test_evolutionary.R
6fd9d3c3858504e91e0596ecf830e319 *tests/testthat/test_getseq.R
b7aa05edf8d0d4c293433e6d989188bb *tests/testthat/test_go.R
3fe247f5cf60b40a61e69525714080a4 *tests/testthat/test_metosite.R
5120ffd1a1cec1c0fa231b3c2cba7c3e *tests/testthat/test_pdb_ancillary.R
c4ebfc921d9e95d2cce554d9bf9a0d81 *tests/testthat/test_ptmScan.R
9efe87bdb33c2644697177bd103d6725 *tests/testthat/test_ptmplot.R
c1bb161220b437dcc0c71f86baca1f56 *tests/testthat/test_saromatic.R
