249e64a74dcb44646420859609d7ab2e *DESCRIPTION
e62637ea8a114355b985fd86c9ffbd6e *LICENSE
2b1b0fd94b59fbda9fb9cfbc5f53b4fa *LICENSE.note
409e13eedb214f8829324353843d4827 *NAMESPACE
a0c5fb8436e9ae9d735ca77e78fd05e9 *R/RcppExports.R
9476cfa99c463cd1dc72ae8d05f1940a *R/cla_secsse_eval.R
3d5b21904dfecf646f0f7cda99b5acdd *R/cla_secsse_loglik.R
dac6b8c650ce5b30a84ae285e772c0ae *R/cla_secsse_ml.R
9d262afc981d5c76d2169ab0d0903171 *R/cla_secsse_ml_func_def_pars.R
0dcf219745c61c64042c3c6d3539e4d4 *R/data.R
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e059b0d798aeb00ab3ccf8f96f8b4f91 *R/print_init_ll.R
1b54137d4ae82b40a266122de6d1201b *R/secsse-package.R
851ae5cbd42097951af563c0b37b985b *R/secsse_loglik.R
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5c81b9a5a57486a286193babc7eb4949 *R/secsse_prep.R
10a404a638124a5da9ebd5ba939b9142 *R/secsse_sim.R
5ae224d2b5172524493a7601c974a624 *R/secsse_utils.R
cb4924f3573383fca290a0a8e2ca5294 *build/partial.rdb
ab1bca8beca7ea417b869483be58c0c9 *build/vignette.rds
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a0af3149ac497eba803e09bf8d3e87ca *data/phylo_Vign.RData
4ddf644968a992ddbcc1f156385c8633 *data/traitinfo.RData
ed06928b38f65a046abac55644b3e494 *inst/COPYRIGHTS
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ce1dbbcb443a5d497a933f7a93731a29 *inst/doc/Using_secsse.R
94970bbd23e595341367bd70a7dce73e *inst/doc/Using_secsse.Rmd
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229342065e10f15b2723956e201aee45 *man/cla_secsse_eval.Rd
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642c40e75a48eb3d2154df39a1d8ff4e *man/cla_secsse_ml_func_def_pars.Rd
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50cb7ad03c8ab758d2cecff1f452c438 *man/event_times.Rd
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1ee398b1c89194bb64ee6f376ef87ec9 *man/expand_q_matrix.Rd
95a412daa9d9d6efd30b68517fc520d3 *man/extract_par_vals.Rd
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173bfe5cf3d4a0135b1511573e287786 *man/secsse-package.Rd
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ee4365e56c730b766a99745bb292e6ab *man/secsse_loglik_eval.Rd
6ed779d2b612a496c8648bc238fc5bc9 *man/secsse_ml.Rd
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85e5823ceda4b43159fc191012d9ab55 *man/secsse_sim.Rd
0f580ea04e8a3c22e6d1edf09a597c62 *man/sortingtraits.Rd
1480129d8ff39f1c148fc9b7ef323e14 *man/traitinfo.Rd
1e6ef1224197afc8fdd9bd26e9e0ab63 *src/Makevars
0b55d287c878d8088d7e0e49d47cc493 *src/Makevars.win
9aed93043548cd148ff2a4c16e85c70b *src/RcppExports.cpp
ebbd9aa1091523c9e830f0b088e15c11 *src/cla_loglik.cpp
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9e011799640e9de73558551472d11202 *src/odeint.h
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3abfc20dc07367c8da20e6ce9518cc91 *src/util.cpp
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f9d50d3f58b3214022cc38c13651e153 *tests/testthat.R
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3d7ab739143119bff2624b8f5e4dc42d *tests/testthat/test_secsse_cla_ct.R
cf7820552e20cbc38e042335d7523793 *tests/testthat/test_secsse_ct.R
d5a4029648a4ac37cf553c4588dc7138 *tests/testthat/test_secsse_sim.R
94970bbd23e595341367bd70a7dce73e *vignettes/Using_secsse.Rmd
d80c79bc5d1a7c3ddecc04d3e32b75fa *vignettes/plotting_states.Rmd
e8d36d38bd9379b636bae052cf97d0f7 *vignettes/setting_up_secsse.Rmd
