f8da00aa60bf436ab2c7c38220cb7b6b *DESCRIPTION
666eea110425397b5596dccc51a709a2 *NAMESPACE
d8f60591c9c71673e34aae16deea8ef1 *NEWS.md
3c45c2b8a45e5144c5565827ab419d77 *R/RcppExports.R
6dba54843cbe1a4984128f2c8414ad6b *R/amm2tibble.R
eb8378bd7f68eea7a9da5b37b4564d13 *R/anc_match_masks.R
ec2d3b4a9f46324c1a4fd616f02f23be *R/ancestor_abbrvs.R
ab319018375b94654d4971047171b365 *R/cat_dom_relat.R
024777050ff6514343b87236c5c64f1b *R/compile_related_pairs.R
20bbd6ca9f1d11615ff6f582b46aa8a2 *R/count_and_plot_ancestry_matrices.R
0122139b3dfd35959cb3b0ea1297e024 *R/count_and_plot_mate_distribution.R
d9e873eb22701c865cf134e9a0e78e1c *R/data.R
48b24565def612c2c1b0ae120a121f0a *R/downsample_pairs.R
452d55c3e4a67768606b6bea55ce65cc *R/find_ancestors_and_relatives_of_samples.R
61a72c8c852237a6031619beaba38aae *R/gg_add_generation_bands.R
fcccf6fe3f1ffdaee07efc1e30d2aca4 *R/gg_add_zone_perimeters.R
c73ae4dae85b836f5a6c92a44c2514b4 *R/ggplot_census_by_year_age_sex.R
2690fb16fc845871902a3420dd2adf59 *R/import.R
c76c7aa44de8be5ecee012b7a2b737d2 *R/install_spip.R
87195b0b03e0a331abb038f5f53f295a *R/leslie_from_spip.R
333d79c65602ddb2703397d384e36dfc *R/plot_amm_from_matrix.R
ccc8438c7d47fc148c13b5cdf6c62a10 *R/plot_conn_comps.R
77893467bed37f0a147fee444752db72 *R/prepare_for_dfs.R
6a83363dc7e653edfa285d7bf19cb569 *R/recapture_pairs.R
a129555022dbdac9b18a5d559d77038b *R/relationship_zone_perimeters.R
a5f18e675d31cb8034a1f2acacb7ec7f *R/relpair_conn_comps.R
e0e3e47c345be32cdb21b7a5415b6a8c *R/run_spip.R
07d0c45a8c3a74c5c7b2735aa3c4dcd8 *R/slurp_spip.R
559361f3209f325284a82a220835b407 *R/spip_binary.R
a850998b1b52d05d09eb0dc5291eb0f3 *R/spip_binary_path.R
e37b2a2bb20d9376a316d6957072ba02 *R/spip_exists.R
1e60a381c39448ae5b825e4ce043cf23 *R/spip_help.R
6f7538d6c5451245b05ea34c21d20174 *R/spip_help_full.R
df1706dfb7c485bce762db22b1add603 *R/summarize_offspring_and_mate_numbers.R
47e1b2ae57acc25e3796eefe46de1426 *R/summarize_survival_from_census.R
dbdf97ce57e9b9476fe7c899dcfc7789 *R/uncooked_spaghetti.R
374fe377e77908890dd2d7992d6524fc *README.md
4cf595677ecea724b111e89384eaf05a *build/vignette.rds
6bdedc5ed19362a9d098712fdf68f913 *data/example_amms.rda
34e223cd87b847e08edfa0fe24ed3024 *data/half_first_cousin_amm.rda
655bd6e7af02d65db6ce6b3a9565edbd *data/relationship_zone_names.rda
ba1693a5dc04242adc58fd1830b58af7 *data/species_1_life_history.rda
8f1b043903eb14a4be546527a2ee2ecd *data/species_1_slurped_results.rda
980fce456ffe0695dc4e5279679faa8c *data/species_1_slurped_results_100_loci.rda
5e3cf0888580846b4009d9ae847fc10d *data/species_1_slurped_results_1gen.rda
c93dd4655465ecad6cb42baaeee5b023 *data/species_2_life_history.rda
a7bbd176960e9b9cfb42b19eb474c32e *data/three_pops_no_mig_slurped_results.rda
16ecd1d33c854e19846c3fc7e9fe95c0 *data/three_pops_with_mig_slurped_results.rda
e2a8ced7eea3a786d6891649130bc21a *inst/doc/about_spip.R
0e57d2363ac73680c84afad5a199b037 *inst/doc/about_spip.Rmd
e0860ef934dc5aa944d52c18ddeff110 *inst/doc/about_spip.html
5c8ff2479194d37655ca35489633be05 *inst/doc/simple-example-with-migration.R
0240015e40b8edc914b6c50f42f3bfeb *inst/doc/simple-example-with-migration.Rmd
2ad449aabb6346aa10f002dd75428c71 *inst/doc/simple-example-with-migration.html
d70d3637f170a72d05444720b68ea007 *inst/doc/species_1_simulation.R
1df1f236d4c654773fb5036386326e64 *inst/doc/species_1_simulation.Rmd
2aa1538129f6db0155e1ed45af399a7e *inst/doc/species_1_simulation.html
896700fe67b64117c0985254797f102f *inst/shell/single_pass_cps.awk
18a3ca155c69b8fb8458576d2770aa01 *man/amm2tibble.Rd
1b2a1cbcdd086cad59158f9ee3f477dc *man/anc_match_masks.Rd
f6266dce2f441acbe61e96cd2cca5b30 *man/ancestor_abbrvs.Rd
8fc17c68e5c9811440ae7836f2f61c92 *man/ancestor_vectors_cpp.Rd
02d4e8a1deee8d93ed175e450097eb60 *man/basic_amm_plot.Rd
ed478317750ac90fdb1e659f4232fa65 *man/cat_dom_relat.Rd
ea33d92665d6d59f3703a708f46ba739 *man/compile_related_pairs.Rd
2db124f8e11f59bf87a198e65d0fffa0 *man/count_and_plot_ancestry_matrices.Rd
b31a948b141980f4d83b38dbcbf60eae *man/count_and_plot_mate_distribution.Rd
195f4f9f4bb6cb34f440c6949a931b6b *man/downsample_pairs.Rd
8a73c7e578cf22edd930987d83d853d7 *man/example_amms.Rd
3abac840462c70612741d47c19e239a8 *man/figures/CKMRpop-sticker.png
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940627f3a2ce427590ffdbaf744db30e *man/figures/spip-periods.svg
19e2a02e27fe98b38d024d874e0a4900 *man/find_ancestors_and_relatives_of_samples.Rd
fea5fb5500ada84f43538d09ebe4a2ea *man/gg_add_generation_bands.Rd
4a5c65349b463276ee4ba0302bc6d741 *man/gg_add_zone_perimeters.Rd
a03a540f73a9cbc820710de7bbb5664f *man/ggplot_census_by_year_age_sex.Rd
629f0a1928f8c6ca96e94dbe0d4b19c9 *man/half_first_cousin_amm.Rd
f2660b3d7a31c44b78c62637b15bab89 *man/install_spip.Rd
591ec34b4d5b9d5c754fef04dfef0587 *man/int_pow2.Rd
a96927b1ce95b7b03ffcee0df2094f70 *man/leslie_from_spip.Rd
19226465eded687222500790db8c5b0c *man/pipe.Rd
424debbcd2e2a5f790e9d1e298008688 *man/plot_amm_from_matrix.Rd
e4a135dc3f17d2ee6860313c109fe979 *man/plot_conn_comps.Rd
e7696ea3ef55715b9785cfb83588656f *man/prepare_for_dfs.Rd
d99d9ee53417140beb26a492f3a9d8dd *man/primary_ancestor_pairs.Rd
822f8b516cce20506724532b709635eb *man/rcpp_ancestors_and_relatives.Rd
4bb954f938983fec57386c75282655b8 *man/recapture_pairs.Rd
fd828e6881f6a10f2af2f901d63b91a7 *man/relationship_zone_names.Rd
0f1f835913265c776b8a365616f52c69 *man/relationship_zone_perimeters.Rd
3d1a13a6f914905c1c2732093efd755d *man/relpair_conn_comps.Rd
1fe722cf02aa69064bd9a00237401916 *man/run_spip.Rd
04faadc811dc5c24bedaa2d4401cb1b5 *man/search_down.Rd
1f39dfa148a3587507e68361244fe9ea *man/search_up.Rd
af322bcd418bbccde5e2846b28aa39dd *man/slurp_spip.Rd
409cf30cef5a4763e7f4d8a72f76b229 *man/species_1_life_history.Rd
ae52dc6b8714f56a0a29825c9e81404f *man/species_1_slurped_results.Rd
599fab6ed62d647fbc8ea95cbd2b3bd4 *man/species_1_slurped_results_100_loci.Rd
369caee01986d212c6321296cafb84cf *man/species_1_slurped_results_1gen.Rd
7790799594605118e8f4ce1ad0b56026 *man/species_2_life_history.Rd
85ec39051283e75140da062f7227d6b5 *man/spip_binary.Rd
fe706c21a9394364b1f010d92a509de0 *man/spip_binary_path.Rd
1605401b4ff7e64b917303c3ea7de332 *man/spip_exists.Rd
5a5dc5aeb894ef30842bcb9a0eaa3b98 *man/spip_help.Rd
0a94b82c5ed0183034ed0c2d618e01ec *man/spip_help_full.Rd
79151efd6cbe242cfd1f3c2266f930e7 *man/summarize_offspring_and_mate_numbers.Rd
b76452ff49ef3ef43ac4b6d61b8af6c7 *man/summarize_survival_from_census.Rd
503a9586199067108dfad88726c55fc5 *man/three_pops_no_mig_slurped_results.Rd
cb8bceb6ecca9b085579120e0d343187 *man/three_pops_with_mig_slurped_results.Rd
20432d27dc24b40eff710b3d1d009fc7 *man/uncooked_spaghetti.Rd
e6f288d572c6408a226180062020d3a4 *src/RcppExports.cpp
f7f241cb0f063c4edd66ae994cd9d130 *src/dfs_find_sampled_relatives.cpp
3e3313c71b6796a2f9427d41cc255439 *src/primary_ancestor_pairs.cpp
0990b7e7bdb02efff08aa840735e8cb2 *src/rcpp_test.cpp
0e57d2363ac73680c84afad5a199b037 *vignettes/about_spip.Rmd
0240015e40b8edc914b6c50f42f3bfeb *vignettes/simple-example-with-migration.Rmd
1df1f236d4c654773fb5036386326e64 *vignettes/species_1_simulation.Rmd
