d25d65f076b0328afaf6dbe379360b3c *DESCRIPTION
561801ba0f784775766f1e85c3976217 *LICENSE
ed4a0debc88b9554f9584b0ddd1342d8 *NAMESPACE
b0a01b0b669c895aea4f3e3491fd9b67 *NEWS.md
3556fa0b02ec3ffc5cc4da3fe23ddc28 *R/BootKmeans_func_20210910.R
49beaae0d4c97bb5c0df41e94f001dc8 *R/ClusterMatch_func_20210910.R
343c61ddac8b10da2671b8b88ce3ffec *R/CreateFas_func_20170924.R
5bf9cc950b7eb5bb9d8908a1b53e9532 *R/CreateSamplesFas_func_20170924.R
23bc7997a3f9c6c2f2e91d946b64f1e0 *R/DistCalc_func_20200902.R
0ad0898f2b9a3dd58fa4097977386b58 *R/GetHpltStats_func_20200915.R
ffa8824f9370564f6201de06fcb31b5b *R/GetHpltTable_func_20200915.R
15542ed187574a3bc7264646f1d95934 *R/GetReplStats_func_20200914.R
252b328c06beb9d25c6fe47768d46977 *R/GetReplTable_func_20200914.R
bc31b4474f39ed537c80670fad558507 *R/HpltFind_func_20200915.R
521d58f1346a3bc74342c8427c97e2e5 *R/PapaDiv_func_20200915.R
1020002f3b3c7b40f0bd7600f2d389e2 *R/ReplMatch_func_20200914.R
4b18bd2fb645019696234c6526f5e7a2 *R/k_summary_table.R
229c3f003a8af637e9ba6b74ef368e85 *R/nest_table.R
238b6d2eb4167dbf2e79429f2b6c6782 *R/parents_table.R
3bd133932ecd607b6e51e58bee4b52c2 *R/replicates_table.R
7d626fbfdf3807df677649ab9d668fc3 *R/sequence_table.R
5720a79564fc7ebb3d537d449ebf56fc *R/sequence_table_fas.R
48ac98881d7bf956c60de3dd377742e2 *R/sequence_table_repl.R
c779d42b4f7a40800dbe703c622c065e *R/z1_matrix.R
4815a1055aebdf1974bf642555390fa3 *R/z2_matrix.R
355c119f41caa6c9af049a8877365d07 *R/z3_matrix.R
67df4e9d7d8de4c68311c35dfb93fcfa *R/z4_matrix.R
2d660a5dadc63982457c8a1dffe7daf0 *R/z5_matrix.R
b0dcdb977f840ef47da5bfbed4c0e383 *README.md
f62ac9e6d3666bbf40e6c9f3d0631bf3 *data/k_summary_table.rda
6d7f534c3756e1d2fce6ab4970540571 *data/nest_table.rda
8688a1db4a2cbc09fe57327798733504 *data/parents_table.rda
480fe83a822ecc01ef093405e675d4c4 *data/replicates_table.rda
82ff790f465556fa86b37d4d3f23719b *data/sequence_table.rda
afbacaef98d462db562cab89321539fc *data/sequence_table_fas.rda
9fbfc1dcade8e5177ecb3b3970ed73c7 *data/sequence_table_repl.rda
ac109af3f2092c8b9490d810d88860de *data/z1_matrix.rda
e39d5fb7174f36d5ff708d9224c9c42b *data/z2_matrix.rda
974cc0c81e888fc78e26218b017729fc *data/z3_matrix.rda
b406b4097e0e1b58b2834421b8bba1b9 *data/z4_matrix.rda
648bdcf1d010814938bed5fcd6a5ac1a *data/z5_matrix.rda
c696c0a65d2ff13fecd476b3fcf03ea3 *inst/extdata/ClusterMatch/Kclusters_model_10_20210913.RData
76260a61539f05f1b3b9b2d751b1289a *inst/extdata/ClusterMatch/Kclusters_model_1_20210913.RData
e77880b0c3045d9afb0b03e36a45db53 *inst/extdata/ClusterMatch/Kclusters_model_2_20210913.RData
d1d1aea8f57a4b3f44b4fb631032a9d8 *inst/extdata/ClusterMatch/Kclusters_model_3_20210913.RData
4fe6e700d5c944012b2fb1991b5ff120 *inst/extdata/ClusterMatch/Kclusters_model_4_20210913.RData
4e076be11470072e68bd994ee858a4ad *inst/extdata/ClusterMatch/Kclusters_model_5_20210913.RData
eee22eef5d05d348f57a76d3aa626a5d *inst/extdata/ClusterMatch/Kclusters_model_6_20210913.RData
e3f1422e3615aeaf289281eecd1b80b1 *inst/extdata/ClusterMatch/Kclusters_model_7_20210913.RData
19a134ded4436a01064c8249defecd68 *inst/extdata/ClusterMatch/Kclusters_model_8_20210913.RData
8f2641873c421ed27a27948ef41cc25a *inst/extdata/ClusterMatch/Kclusters_model_9_20210913.RData
58ea7d7dbb5ddd23011e9d7f6329e6c6 *inst/extdata/HpltFindOut/Haplotypes_nest10_20200915.Rds
9c1c9cf47398e06c5e95e19839c2a587 *inst/extdata/HpltFindOut/Haplotypes_nest1_20200915.Rds
f4f94fcdc5976caeb5630a21bcd05023 *inst/extdata/HpltFindOut/Haplotypes_nest2_20200915.Rds
fbe5cbc0aeacdb0aa10a082e19a7637e *inst/extdata/HpltFindOut/Haplotypes_nest3_20200915.Rds
2e43c84b955987561974d45629cd00ff *inst/extdata/HpltFindOut/Haplotypes_nest4_20200915.Rds
4ca6ab726f9087884d23dc42e1a32eaa *inst/extdata/HpltFindOut/Haplotypes_nest5_20200915.Rds
387d0e3cc1275e36575b31b5467b4ed9 *inst/extdata/HpltFindOut/Haplotypes_nest6_20200915.Rds
8f068ee13a8d011939010132c547937b *inst/extdata/HpltFindOut/Haplotypes_nest7_20200915.Rds
5b0a3752a453e4dd950b7294d4e92b1b *inst/extdata/HpltFindOut/Haplotypes_nest8_20200915.Rds
44e4f898b25dd89c70170a31139ee716 *inst/extdata/HpltFindOut/Haplotypes_nest9_20200915.Rds
7b81441f641174e60ff7f62f70c15752 *inst/extdata/ReplMatchOut/Repl_set_10_20200915.Rds
9a68d4386a82655ee961e48dcc0784dc *inst/extdata/ReplMatchOut/Repl_set_1_20200915.Rds
ecb318d569d9f1d17b1c63b2cec26835 *inst/extdata/ReplMatchOut/Repl_set_2_20200915.Rds
05ac2b308b01f5e5ec846854f3148991 *inst/extdata/ReplMatchOut/Repl_set_3_20200915.Rds
e39648a64e7fed9bb9ddab025a4ce47d *inst/extdata/ReplMatchOut/Repl_set_4_20200915.Rds
97aa947f79bfae66e58248c5319933e9 *inst/extdata/ReplMatchOut/Repl_set_5_20200915.Rds
85fba66e14c5d6a4435522704c332594 *inst/extdata/ReplMatchOut/Repl_set_6_20200915.Rds
3605c65784c0c78b65016f78075f3387 *inst/extdata/ReplMatchOut/Repl_set_7_20200915.Rds
07e8c3b3ce4be8938950c54287bd1ac9 *inst/extdata/ReplMatchOut/Repl_set_8_20200915.Rds
7250b7e328c07e0cb10720fa311ff42f *inst/extdata/ReplMatchOut/Repl_set_9_20200915.Rds
5c9ba66242e63b7ad537bfcfea4a85cf *man/BootKmeans.Rd
4ebb0e8f240891526bacac952c9024b6 *man/ClusterMatch.Rd
e384ead6829ab9e1c4f3b25307bafb4c *man/CreateFas.Rd
d4e1b3cebfe9257ae806681ae9a6dfd2 *man/CreateSamplesFas.Rd
7f84c33d990503dc1f90c010d875321e *man/DistCalc.Rd
0544138041b30d55408ef355999167f9 *man/GetHpltStats.Rd
79c691a2d75449c6a6725ae905d6d81b *man/GetHpltTable.Rd
d0a8c71ff206d58c00e87cdfbb717d59 *man/GetReplStats.Rd
c80678f3ac91c4f0e594ba1cc78ef1bf *man/GetReplTable.Rd
4fa837b7c7e87a0dc25de7dd586d11da *man/HpltFind.Rd
693b827eefe4562e16fd965fb8a2c742 *man/PapaDiv.Rd
df0c435034b675eedca64ef204a0c95c *man/ReplMatch.Rd
01ca8d322b0647b81ef7331ef3370cda *man/k_summary_table.Rd
105e107e7d6af49686d44bdacbdbb0b0 *man/nest_table.Rd
946c54ac38a9e17d02f0343c32d0e72b *man/parents_table.Rd
a22110713b3efebdce143fe582480567 *man/replicates_table.Rd
723c99966e8ab01a2dde29296a8fa3a1 *man/sequence_table.Rd
ab05b355404c30658e1e09ec6c558270 *man/sequence_table_fas.Rd
cb66097f28dc43c5e9995047030bf9af *man/sequence_table_repl.Rd
7cf71adfe223ac61067a0f8726a78952 *man/z1_matrix.Rd
dcd1b23a3efb5b5ddbd6301ff6b2dd35 *man/z2_matrix.Rd
ed5a48b3769bd6761b6176b7d10474d7 *man/z3_matrix.Rd
6f8170d48a2db57c4da7e2bea8c0309d *man/z4_matrix.Rd
444f1c5cfa2f788b91a94a18309bde31 *man/z5_matrix.Rd
