1a31e88f757c9df6779e004fdb5aa04e *DESCRIPTION
e60ef812cc90e5b39d81ec308df3cc1f *NAMESPACE
b92b4c4ef18d1b68270fb02362fcc65c *R/Analysis.permutation.R
14add94b2754b11ca9d5ac150c2b7b06 *R/Extend.R2GUESS.R
9294a4edfdd6d492fb62caf1c84759bb *R/FDR.permutation.R
aea23d05c6292663790f964a8ef3b616 *R/Postprocess.R2GUESS.R
fd95eaf18eab7a83f58c4d32c620f55b *R/R2GUESS-package.R
cf52b3df70328072f14acffc5df022e1 *R/R2GUESS.R
62b847ac3bfadfb915b4cacd54e2aa7f *R/R2GUESS.perm.R
3282de083224cd3f95c11a98922316c7 *R/Resume.R2GUESS.R
0ea0b36a1f35df2460fd80a51da2c4ff *R/as.ESS.object.R
7ea63553aa1dca9f69fd17da35773edd *R/boxplotbeta.R
d6bde4dc49078b9db29edf394f292917 *R/check.convergence.R
aacdb327174eb45da179ac21fc7597a0 *R/example.as.ESS.object.R
3f58414eafbba258116fd833170dc098 *R/get.best.models.R
4493e4081f0147a91ba4b382cdb09d40 *R/get.g.sweep.R
dfcac5a54c3e3d9c76f72f1ef01b12d6 *R/get.sweep.best.model.R
09ec83356a4b46704939005883a2b03d *R/pairwise.correlation.R
2cbe7065c81ad852abcf4e14f1260e4c *R/plot.ESS.R
8509a8c9a19311d83530188bb14cbed2 *R/plotMPPI.R
db9a75548789d9895a0bf652a1d59130 *R/plotcim.R
efb61d0bf1bcc70ebdec417a8082d216 *R/plotcim.explore.R
8d6c9e778cb7ccba52465564778f0fc4 *R/plotmodel.R
51ce6384515ff0131e96143392bbed33 *R/plotvariable.R
61a45658c4e1bce78cd58d1860d05b79 *R/print.ESS.R
f67de564f28b1d08943fe0f5e3f7832f *R/sample.beta.R
c98203b5003bf77ed9815411ab91b3b9 *R/summary.ESS.R
8fc57cfef59d2913e4897afc8af2bd5a *R/summarybest.model.R
d4b0bfde6798c899c1b84fab64e3a474 *R/wrapper.R
1c3046456fc03ee4989e578cbe3b3f4c *cleanup
df9363470ff915e0859b81b036678719 *configure
ff1712ed5c0d3ca8c7a33dee80bfb3e1 *configure.ac
bed011899ee91cb8c98d9c84535f066e *data/MAP.file.rda
037adad8714571e037874f8c5d364be2 *data/data.X.rda
02c398fa98ad0e54362cc4893c6c17e0 *data/data.Y.Hopx.rda
ca35d4adeba96bbf4d035b42ecb2072b *inst/Input/data-X-C-CODE.txt
18000a14c5ccf0325dde643fde9d7ecb *inst/Input/data-Y-ALL-C-CODE.txt
521f81ec2bd64c470074504255eee66a *inst/Output/Example-GUESS-Y-Hopx-command-C.txt
1926a9f3e9147a05384882c05f24f907 *inst/Output/Example-GUESS-Y-Hopx_features.txt
89f667f99ae0f87aae3e4e9b0d672d4c *inst/Output/Example-GUESS-Y-Hopx_log
eb2011be4195a0e334b74c2ed1695c78 *inst/Output/Example-GUESS-Y-Hopx_output_all_exchange_history.txt
08b9e9411952b73391bd3179ec913a6c *inst/Output/Example-GUESS-Y-Hopx_output_best_visited_models.RData
07e06c3f6f17c7cbec520e1e4d5f19e2 *inst/Output/Example-GUESS-Y-Hopx_output_best_visited_models.txt
676bd70537bd397310779c98caedd914 *inst/Output/Example-GUESS-Y-Hopx_output_cross_over_history.txt
509ea5e679573c9fd94735d98eadb557 *inst/Output/Example-GUESS-Y-Hopx_output_delayed_rejection_history.txt
8b5b93e7fe9dc34dcb95b72890f4b0ad *inst/Output/Example-GUESS-Y-Hopx_output_fast_scan_history.txt
55976cb2d7bb2876173add3074259101 *inst/Output/Example-GUESS-Y-Hopx_output_g_adaptation_history.txt
29e474346aa6b14c5839af0574f74179 *inst/Output/Example-GUESS-Y-Hopx_output_g_history.txt
2489c5b3c3106007f4b63f9cb62af5a1 *inst/Output/Example-GUESS-Y-Hopx_output_gibbs_history.txt
5ef11e7c9af561e680dfbc9eb209be87 *inst/Output/Example-GUESS-Y-Hopx_output_log_cond_post_prob_history.txt
186e6eed9b103ddda3f46ec3d9cea871 *inst/Output/Example-GUESS-Y-Hopx_output_marg_prob_incl.txt
d05340e1b0e35776e1c74fdd0bdd5c7b *inst/Output/Example-GUESS-Y-Hopx_output_model_size_history.txt
0c317b76e485844979c161641cb04952 *inst/Output/Example-GUESS-Y-Hopx_output_models_history.txt
39cc975347b8081277b856692d4675df *inst/Output/Example-GUESS-Y-Hopx_output_n_models_visited_history.txt
a6f1aac52d660dfd5715f92f952f436e *inst/Output/Example-GUESS-Y-Hopx_output_temperature_history.txt
a6fd53e2e2f5b11eafbb92ee07347854 *inst/Output/Example-GUESS-Y-Hopx_output_time_monitor.txt
da06cca581918dc8cc1cdcf32ae2f3b0 *inst/Output/Example-GUESS-Y-Hopx_random.rng
3b0f20d6c0918ecdb470e52ed3ce56b5 *inst/Output/Example-GUESS-Y-Hopx_resume.txt
d98e31ca70c6861c455bc0b57a1a0aad *inst/extdata/Par_file_example_Hopx.xml
2c5d196a6c41af9c26c658e0b0dd5c5b *man/Analysis.permutation.Rd
e66dc496d8c0edd248880298669e6eb4 *man/Extend.R2GUESS.Rd
d3795b623904dd9ef3e1ab5b06bc2cfd *man/FDR.permutation.Rd
1d9077a4b59a5ef36e8c4e6280ad6485 *man/MAP.file.Rd
59df0fa04e0b84d6c8209927de1200b1 *man/Postprocess.R2GUESS.Rd
4894b339799db90fae0cc1913d9aa146 *man/R2GUESS-package.Rd
3bd58b0a9f9371209094b136b87b069c *man/R2GUESS.Rd
7dc03a76bf37275b8efe4ab7342b3417 *man/R2GUESS.perm.Rd
a10ba831cc8c62c3ad2bdfe8eb2f4fd0 *man/Resume.R2GUESS.Rd
66fda1ef6f0ec966696c15cfa41090df *man/as.ESS.object.Rd
b5d69a51d8ea4455076e61772989a468 *man/boxplotbeta.Rd
01c4750e360b7bbd56798279aa024d9f *man/check.convergence.Rd
fee5d649fde4c1b99329a8eadc3257b0 *man/data.X.Rd
aaa61040f1d61c87678619600a5cf25d *man/data.Y.Hopx.Rd
d2cd7ec8cad498ff965f6f39ee4cc6ff *man/example.as.ESS.object.Rd
04293b16ab58aea6dd7f887e001d2bb4 *man/get.best.models.Rd
b937f5077a22947dd422610092e5c484 *man/get.g.sweep.Rd
098321279d0902699d1ca88e73feb3a6 *man/get.sweep.best.model.Rd
cd01f13bb4cb29c0b90799829a5a15a3 *man/pairwise.correlation.Rd
b30a707927e97fd8221b96700a77f888 *man/plot.ESS.Rd
c8c3b4ec98334cb86a744bbfcb1b34b6 *man/plotMPPI.Rd
dcc30985adc65e2f63411efd114e3fa6 *man/plotcim.Rd
08abb7b16f4dd678cbad11510bf576ab *man/plotcim.explore.Rd
2f4d25c9a4e7fae981cca6cae497fb25 *man/plotmodel.Rd
61c59f0aff8425669227f04ad879fb72 *man/plotvariable.Rd
55aa9150c1228cfe32339168193d292c *man/print.ESS.Rd
a7c01a9779e36a723054710c31ffc076 *man/sample.beta.Rd
6715460f392df112ec41f4cd211d01fe *man/summary.ESS.Rd
4e19507304d5ac54cef024c5d36573bc *man/summarybest.model.Rd
1c058734b11f7ffb609e5f28ab7ecbf7 *man/wrapper.Rd
3fd269cb98c37e8bada379edf44484f5 *src/Classes/CM.cc
03b8be42dcdc56584d8a7e802a76f0c8 *src/Classes/CM.h
a7f9b6cd07e372938b26045a3bd40d67 *src/Classes/DR.cc
a057a75cc000cbaaf71e2572f3260f9a *src/Classes/DR.h
f2810b7c3d31c57714de5a51101bcd38 *src/Classes/Double_Matrices.cc
0db324d717c3de1fb45f22bddf0fddf4 *src/Classes/Double_Matrices.h
579d3999edcd3790329c1a884d1d504f *src/Classes/Double_Matrices_cont.cc
efb89c58e70500d601ad7ba49b1c3c39 *src/Classes/Double_Matrices_cont.h
1b7e328eb2e9b6e8248fc0ba003c59ea *src/Classes/Int_Matrices.cc
200b7d3d04cc61f057c1526bae4a00d4 *src/Classes/Int_Matrices.h
063e9fc58b968aa7a1fb7448eb3248a8 *src/Classes/Int_Matrices_var_dim.cc
ff2e87f1063c4d5d2ce66d653c4fa4c8 *src/Classes/Int_Matrices_var_dim.h
01dc53654f07fc170bf315dbe9251502 *src/Classes/Move_monitor.cc
ff3dfab77d4448bc27ad88df553cca72 *src/Classes/Move_monitor.h
dcc32bb1b1095809fe8297615cea284b *src/Classes/Prior_param.cc
d90d5ed8450c0a8b8b381abd76ab7b65 *src/Classes/Prior_param.h
222cc28d61bf0fc9935ad9af7f8deb16 *src/Classes/String_Matrices.cc
c5cdf3131e19749c7129bef028c14fea *src/Classes/String_Matrices.h
6279404ce5697f5d4f11f83296388a67 *src/Classes/Temperatures.cc
b483a76b350f4f7f88b81a4c6ba4f210 *src/Classes/Temperatures.h
3b8e57a2797ea462ea14fb96be70164e *src/Classes/g_AdMH.cc
505058ae78e8abe6f3631a7b6dfbe971 *src/Classes/g_AdMH.h
b53ac99fa6495c82cb96a1594cae3d30 *src/Main/GUESS.cc
5b526cfe8f82294040f99d5cac5e6209 *src/Makefile.in
df05d7acfade367236343cf0155e4c3f *src/Makefile.win
e05d27a2284bcd907b22349f0d70f105 *src/Routines/cond_post.cc
f9bdf8d0146053b8c1fed561be6a6fbd *src/Routines/cond_post.h
cd1fe97ec8521b95fbaccc6cbf9dd4d1 *src/Routines/dyn_name.cc
67ab98707410a648420ad15f1e831991 *src/Routines/dyn_name.h
336d305dd963ec66503bd11f7c9b377e *src/Routines/matrix_handling.cc
bbd811b4fcd40a479c9d42069133f357 *src/Routines/matrix_handling.h
8810b25bfa3162e95b9f4bb5f4357881 *src/Routines/moves.cc
bf76589eade50c8cfe013db9ecfacbe9 *src/Routines/moves.h
161d725c449b3d202e9683b29456cead *src/Routines/post_processing.cc
a72fbbb72d8f1236ee217549744c4993 *src/Routines/post_processing.h
d87360fcc537044e9c9c9f2c9457d6ae *src/Routines/rand.cc
3acf208f4ddc2872f1f2c39f99408513 *src/Routines/rand.h
6569239a72457333d06130640ba05491 *src/Routines/regression.cc
8c3014ed60d237242167605c5f0a4904 *src/Routines/regression.h
7cd232d99f299f6917e0c4c956d02d83 *src/Routines/struc.h
87dec5374f292c1f6ce268c3e308ab9a *src/Routines/xml_file_read.cc
d88a2574c4f9876a6e8c8286be9f0276 *src/Routines/xml_file_read.h
d51a50734bcdb7861e5b69db9e572ebc *src/Routines/xml_file_write.cc
9a170ce8b23d15fad08673ced2b8c25a *src/Routines/xml_file_write.h
