Package: diversitree
Title: diversitree: comparative phylogenetic analyses of
        diversification
Version: 0.9-3
Date: 2012-05-07
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with GeoSSE and
        ClaSSE by Emma E. Goldberg <eeg@uic.edu>, and BiSSE-ness by
        Karen Magnuson-Ford.
Maintainer: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>
Depends: R (>= 2.10), deSolve (>= 1.7), ape, subplex
Suggests: numDeriv, tgp, multicore, minqa
SystemRequirements: fftw3 (>= 3.1.2)
Description: Contains a number of comparative phylogenetic methods,
        mostly focussing on analysing diversification and character
        evolution.  Contains implementations of BiSSE (Binary State
        Speciation and Extinction; Maddison et al. 2007: Syst. Biol.
        56: 701) and its unresolved tree extensions (FitzJohn et al.
        2009: Syst. Biol. 58: 595), MuSSE (Multiple State Speciation
        and Extinction), QuaSSE (Quantitative State Speciation and
        Extinction; FitzJohn 2010: Syst. Biol. 59: 619), GeoSSE
        (Geographic State Speciation and Extinction; Goldberg et al.
        2011: Syst. Biol. 60: 451), and BiSSE-ness (Magnuson-Ford and
        Otto 2012: Am. Nat.)  Other included methods include Markov
        models of discrete and continuous trait evolution and constant
        rate speciation and extinction.
License: GPL (>= 2)
URL: http://www.zoology.ubc.ca/prog/diversitree
Packaged: 2012-05-07 21:02:40 UTC; rich
Repository: CRAN
Date/Publication: 2012-05-08 04:06:51
