72eeddddb80e0dc4c7ea1c600de0992f *DESCRIPTION
e4e98982d434e2611ebb659fd8ca4141 *NAMESPACE
51448fa5d6dfaec7da3233497c3c3cb1 *NEWS.md
d8fd8b638961d96965e609192cbdd8d5 *R/00-setup_data.R
ad66ada1d414b2757e98a1d845452fc4 *R/01-qc.R
c18f7d85d3075aebe47ee9b696548e35 *R/02-gimap_filter.R
60351700332027c8186e934e460396ce *R/03-annotate.R
c1a874bce95996028c7e078d35b70089 *R/04-normalize.R
8daa07cadf400a80421baf55f59bca78 *R/05-calculate_gi.R
17e839e03ba3ba725fbdf267d3722016 *R/plots-gi.R
a28ff7e7f558decf6a1bd105f03950f8 *R/plots-norm.R
03945a8e54fb218628175c33492019c8 *R/plots-qc.R
72d5f323e1234a3ce7df1541c6e9b4c7 *R/utils.R
6d6280da46277b384e522c61f85be710 *README.md
7431ea832375fe33ca9f2868833a759e *build/vignette.rds
71fcfb872c94b0aff07392ce506b0f9f *inst/doc/quick-start.R
f75427376e44bab67c9c7cff76343032 *inst/doc/quick-start.Rmd
ab01414251bb747dfd7c905823a2b41b *inst/doc/quick-start.html
8b0bb03e1a8f5f55a8294a38f91f9a7e *inst/doc/timepoint-example.R
b701edeab74502e5d5c34a3367b1ecde *inst/doc/timepoint-example.Rmd
b8a1688e9dc2e088cd689ddfe94f27c0 *inst/doc/timepoint-example.html
11aff406af2773cc35b3554b8c756d59 *inst/doc/treatment_example.R
838c7736b02c92f3ff65863af2d2fe5a *inst/doc/treatment_example.Rmd
513e63007f1bf6fcaf27fa35c459601a *inst/doc/treatment_example.html
37906b189500647be6f31395435b57b6 *inst/example_qc_report.Rmd
9e25401fd1a0b0aac0115efba2565bf5 *inst/example_qc_report.html
e8b79941a3dbe81de0aa14897f97f463 *inst/extdata/creds/encrypt_pass.rds
57a844fd64959ccf7112b119730dad91 *inst/extdata/creds/figshare_creds.rds
33bf3105ea36a8650b28913310f2913b *inst/extdata/creds/figshare_encrypt.rds
37906b189500647be6f31395435b57b6 *inst/extdata/gimapQCTemplate.Rmd
6aff4d10abcf17a27dedf04b55498e88 *inst/extdata/gimap_dataset_timepoint.RDS
eca56bb5c18d08eb79e57e877e8f5dd1 *inst/extdata/gimap_dataset_treatment.RDS
31d7c3afa63cb0343b4a502992ade19d *man/calc_gi.Rd
08d79460f1b044226187eae4678b1989 *man/cn_setup.Rd
9951553b3bc2c2190207678089615314 *man/crtl_genes.Rd
6613acd88fae875e5758d2fd4fe743d5 *man/encrypt_creds_path.Rd
a795dc2fdf28483b815af2ad614ed190 *man/example_data_folder.Rd
3290b1875960f5e59eabeb74f841c4cc *man/get_example_data.Rd
51c82bddf990cecfcf0ba093a50a8582 *man/get_figshare.Rd
60fb5cc1246a6ea0b70f2f531885ec87 *man/gimap_annotate.Rd
d2b098c1243fd746d79eb50a3937c287 *man/gimap_filter.Rd
063b7702bf111d06f595a9ee478ea6a7 *man/gimap_normalize.Rd
e6c87c81876f60d6e903176ae9ab202c *man/gimap_object.Rd
316281437508e663d5db7ca93f801c98 *man/gimap_rep_stats.Rd
3e31f2fcbb4f6690739a80dadcb65ef3 *man/key_encrypt_creds_path.Rd
f0462616001a6ffe7bdab2dd8babe820 *man/pipe.Rd
97bc1a9ee19477aaf2625e1601ef31b6 *man/plot_crispr.Rd
3d9ed780f3a545548514ba9bc0539a91 *man/plot_exp_v_obs_scatter.Rd
d4fe38a8e1f3dfbafde9382dd0824da7 *man/plot_rank_scatter.Rd
7027f2222f5d39af71f37ca43a49d45f *man/plot_targets_bar.Rd
a29761286ab7a039ee29ffb29d4ef96f *man/plot_theme.Rd
632bca2076b28674cb5d4d2f38b229ea *man/plot_volcano.Rd
ee18f7ff733ae493976f7cb0dd6539c7 *man/qc_cdf.Rd
0c3620fd82eacfc7216d63b55a37302d *man/qc_constructs_countzero_bar.Rd
db58f99fd084281e727917eb8af4e82b *man/qc_cor_heatmap.Rd
e7dea761847e7d8a0af5394381eb7c8b *man/qc_filter_plasmid.Rd
d936750c36ed5889878c5b9a33c0afc1 *man/qc_filter_zerocounts.Rd
7393c83084bc91dac4bf1ef49efdae19 *man/qc_plasmid_histogram.Rd
23458f9ef1fcf0e3e039d2665070fdb3 *man/qc_sample_hist.Rd
311aa3954eaab08c54169e49868c2034 *man/qc_variance_hist.Rd
5e9efeefeeb13a67b7c6700f62152e60 *man/run_qc.Rd
225b7058f5a81b7cfa6edbcd0e6fb89b *man/setup_data.Rd
c53ce5271f074afde605abb3ef5a2efb *man/supported_cell_lines.Rd
caa776e49056c25cf305db3b495c4aac *man/tpm_setup.Rd
b3d2e8791ddaba0ac94191361a336be9 *tests/testthat.R
345ab98140885b3a71acc0d90aceaca4 *tests/testthat/test-annotate.R
bc12bc0e77c48257debfe7a8a37c3e33 *tests/testthat/test-figshare.R
51b74bf30b7ec2fbeeca19e1243f9a8a *tests/testthat/test-gi-calc.R
4899d1df201f24f11f83ca6fd6623eac *tests/testthat/test-normalize.R
a9154cff13197ab05529a939c87af13f *tests/testthat/test-run_qc.R
f06a4c4d3c8750b7cbe6537c947079a0 *tests/testthat/test-setup_data.R
da8158dec76cd3863ad84798c912161e *vignettes/images/results_table.png
d0431667829a2dc53ed83504f4bc6f93 *vignettes/images/volcano_plot.png
f75427376e44bab67c9c7cff76343032 *vignettes/quick-start.Rmd
b701edeab74502e5d5c34a3367b1ecde *vignettes/timepoint-example.Rmd
838c7736b02c92f3ff65863af2d2fe5a *vignettes/treatment_example.Rmd
