4ef2ef7d88664d11415a3cc6c51f5989 *DESCRIPTION
e376ef095ae1b19329e233aeff50090f *NAMESPACE
e6164aa6aa5031281453810c1a09f151 *R/DeprecatedAnnotatePeptides.R
b211df9ace98d14c6d9457ea1c729e62 *R/annotatePeptides.R
ac77e96ddbc83025e7f67944fbbd95df *R/computeFDR.R
cede1c8ac4b993808103358ba649aed9 *R/createDecoyDB.R
6dab87c54e64bc0ccca5296d449e8ed2 *R/greedy.R
499c0d782f81e2e4fb4bc0603a396a07 *R/hello.R
489c94b833154f2d0db6114977f68948 *R/loadContaminantsFasta.R
77533c44ace4f968f58db625d2586cc2 *R/prepareMatrix.R
70eb7072b39b506cc644b8b19bfb5f9b *R/readFasta.R
9de24afa8c7b64004b9237617033e182 *R/removeSignalPeptides.R
51e93265c53a9ff6f9bf39ef1a53ce40 *R/reverseSeq.R
96bfc4390ae966e4cdb22c50f46095d7 *R/writeFasta.R
888e412116807423629abf8ac326638a *R/zzz.R
e0fb47f70549f5e99806908f29f55da2 *README.md
e3f154188d7eb35d1c8f9aa030f8132a *build/vignette.rds
09a544728876f2ef5d4abebbb5ab04b3 *data/datalist
fb798f32be1af9cb462d1c38a1dc4ccd *data/fdrSample.tab
39b2142b9017250fa58f77e027a253fd *data/pepprot.tab
7cefe1d37419145b09e3929cf5284b82 *data/protpepmetashort.tab
36ae2b094b41e5397b8bb8588edddcf2 *inst/creatingDBs/CreateDB.Rmd
9742f80498c7aa21570c4a3254701961 *inst/creatingDBs/fixCont.Rmd
66ea1f3354d3b8acde8bd1ba0c79d8a0 *inst/creatingDBs/specAnnotationMilena.Rmd
fcd3cb79229e84d5d560b469c08566a4 *inst/doc/CreatingDecoyDB.R
f0fdc62e13aef521beffe178025ce5bd *inst/doc/CreatingDecoyDB.Rmd
1f6ed5d09a47c56130421df577447c0f *inst/doc/CreatingDecoyDB.html
c99c2685f568f6480db8302597c979a7 *inst/doc/PeptideAnnotationwithProzor.R
9f7eb845c279f0a3a8bb70af5ee88026 *inst/doc/PeptideAnnotationwithProzor.Rmd
09a6fb26d4be48db822ecc338f64bf79 *inst/doc/PeptideAnnotationwithProzor.html
d6b94462dd3ce6adf67ce3caee89ddf6 *inst/doc/TargetDecoyFDR_Example.R
fe74169649a6c2ebd0a2007851686f45 *inst/doc/TargetDecoyFDR_Example.Rmd
31f7deb041f85b6704d99d3bc7f56537 *inst/doc/TargetDecoyFDR_Example.html
4426e53ce95d79048a66e91f8468f261 *inst/extdata/Annotation_allSeq.fasta.gz
195c0be7ce74070d23b922030f3cdc0d *inst/extdata/Annotation_canSeq.fasta.gz
81d1840e09d798c68bddaf10e670c801 *inst/extdata/IDResults.txt.gz
0a5a849d727a8e5e930af07de2654029 *inst/extdata/UnimodMappings.txt
4b809874e289d0e5a61036a9bb8bf3bc *inst/extdata/fgcz_ContaminantsWithAnnotation.fasta.gz
7a89720fc8fe195865539e4f8cc5efa7 *inst/extdata/fgcz_ContaminantsWithAnnotationNoHuman.fasta.gz
35256a7c859ab8dbd45e352e1e9862cc *inst/extdata/fgcz_contaminants_20130115_patchedWithRespectiveUniprot2.fasta.gz
1e3ff05e99131d12b35a620bca4974d0 *inst/extdata/fgcz_contaminants_20150123.fasta.gz
8347149e587bb268567622af1ecc914c *inst/extdata/shortfasta.fasta.gz
0545fe856dae19c90378217b6d210f9d *inst/p1000_db1_example/annotation.txt
8347149e587bb268567622af1ecc914c *inst/p1000_db1_example/shortfasta.fasta.gz
68cb87314fe00c5d1480391849afdfa2 *inst/p1000_db1_example/uniprot_taxonomy_Oryctolagus_cuniculus.fasta.gz
baa7173078567417ef7e95481529bd16 *man/annotateAHO.Rd
522381d848cd0b08b9867a7ac455a5f4 *man/annotatePeptides.Rd
c552a7e5bd353d9ea9dfc31d2bdea739 *man/annotateVec.Rd
dca6d8e1ab824ec4b583d5863f7da5a7 *man/computeFDR.Rd
7e4109c5764e750d40a65e8c3ffc2a27 *man/computeFDRwithID.Rd
f357c6f3124ade42090054d85bea2d3a *man/createDecoyDB.Rd
dfaea90ee0151bdc8e3970d72d0cd91c *man/fdrSample.Rd
393c6e239c9c502915e2513dfc54d5f1 *man/filterSequences.Rd
ee79730373f1f005ceac4d9abed65a88 *man/greedy.Rd
35fd03dca256f9d2eca9b05da662faf8 *man/greedyRes2Matrix.Rd
fcd7af1415ee70f9c41c27c47893ce0f *man/loadContaminantsFasta.Rd
7e4f1ffbbf51f0473e742df5b259a418 *man/loadContaminantsNoHumanFasta.Rd
29456dbc3fb7f1ddba1359dfd685d1e1 *man/makeID.Rd
1e64c33d9a7de174be5bc52608e92b71 *man/makeIDUnip.Rd
5063349204f8d2c289e9110830ecfa77 *man/pepprot.Rd
a59ae936f9b8a4a118c6da4fbd6397a7 *man/plotFDR.Rd
747715652c6afe864434c3b68ba01c6b *man/predictScoreFDR.Rd
efe2c1fe7072653b8a40544a84d8a32a *man/prepareMatrix.Rd
10493d94dddf7e2a5c55fced1c97feef *man/protpepmetashort.Rd
4119d1429cccfdf6c382740db6626c72 *man/prozor.Rd
ce57e972e0d09ab8f7e3a253408c6acd *man/readPeptideFasta.Rd
8f796ad36ffae2ec92e81ad333238252 *man/removeSignalPeptide.Rd
51aaa962531dcb919c067e8e82c6ec74 *man/reverseSeq.Rd
c83e8634ff76d8cdd1561e0a9b863d9d *man/writeFasta.Rd
f0fdc62e13aef521beffe178025ce5bd *vignettes/CreatingDecoyDB.Rmd
9f7eb845c279f0a3a8bb70af5ee88026 *vignettes/PeptideAnnotationwithProzor.Rmd
fe74169649a6c2ebd0a2007851686f45 *vignettes/TargetDecoyFDR_Example.Rmd
8ec1e3d97139441f2b4d50bb36f5f190 *vignettes/bibliography.bib
c9e91890d2fb0a50dc03293dffe752b1 *vignettes/spectraAnnotationwithProzor.R
1674b649a662119cdec115f2ac209760 *vignettes/spectraAnnotationwithProzor_files/figure-html/unnamed-chunk-2-1.png
