1b17d484a58204d97bf9d1c2c13d7ba9 *DESCRIPTION
147b18b09bb977e3861e2b973bea814d *NAMESPACE
e1d16a8d5703f2be0e7032355aa5064a *NEWS.md
827a091295f9d4f69bc46d66a3f081ae *R/Cube-1LocusTA.R
35463b306a10a02c75ae6aac590cd960 *R/Cube-2LocusTA.R
4797bde870695867f00460b50e4ee682 *R/Cube-ASmidler.R
b97b47b7e0453cf1000ab701e791477e *R/Cube-AlleleSail.R
4de85bbdee6e2093799d1b6c6f3031f6 *R/Cube-Auxiliary.R
290edb200507e369a3b1472636406dc8 *R/Cube-CLEAVRMF.R
cfa09400261ddda28fc5b6de29c9fb4b *R/Cube-CLEAVRX.R
3db501be21c5fc9ede560d729ddd0667 *R/Cube-CRISPR1RA.R
ffc85bbbe050a9be1b35be653ae12ede *R/Cube-CRISPR2MF.R
69784d41f287eb9e88f24761945f3b59 *R/Cube-CRISPR2MF_SM.R
0bbd12513d15dbc50d3e8983197bf760 *R/Cube-CRISPR2X.R
006176ec83681608f685721d5eee6cb6 *R/Cube-ClvR.R
2086937f295c7840533a54e63cea3f2d *R/Cube-ClvR2.R
196e06fef88a38e3c8faee8faec87824 *R/Cube-ConfinableHoming.R
09960b901cc952ef8c1e42d121ccdfd7 *R/Cube-ConfinableHomingX.R
373c838669c199e42e23225300092f73 *R/Cube-ECHACR.R
72d2a9f12bb812e639dbe885997fe3c4 *R/Cube-ECHACRX.R
baff2df3940a195685c257928ef001b8 *R/Cube-ImmunizingReversalMF.R
2062b823b6c444c970135af9b94c0257 *R/Cube-ImmunizingReversalX.R
6afd0aa2b46a6181ca409070308d9726 *R/Cube-JOHNConfineableHomingWithRandB.R
0f694e38db1fd550c926ecbd90fedfff *R/Cube-KillerRescue.R
88229b6164d777e6d3e15e3d808f5e93 *R/Cube-MEDEA.R
61cb08a2f5a161e5d1c0b50caeb8c11c *R/Cube-RIDL.R
2bca88808b6655ab582bd765a697f4bb *R/Cube-RecTrans.R
684e68e2f617652e6974f87ee260fac2 *R/Cube-SMendelian.R
1789b7b45afc6452ca0784d9cecc0cdb *R/Cube-ShredderMF.R
dd71de4044685e2e47bf55de9fa206de *R/Cube-ShredderY.R
26bc1280839c321d0e42657e5dc5e083 *R/Cube-SplitDriveMF.R
31359c9e28efbc8913db87e26c7ab7f8 *R/Cube-SplitDriveX.R
75bfe0ea005e7bf3ccc8147f868ff4cf *R/Cube-SplitDriveY.R
80145f0942f5847c93d64538343940ce *R/Cube-Wolbachia.R
5785f7ca82e2dabed66c3217307c13f9 *R/Cube-tGD.R
1f339f000b6931e2bf002877cb6d987d *R/Cube-tGDX.R
491f152fd47c99fd97c9e287a29bdbce *R/MGDrivE-Auxiliary.R
d62955a03e8472234a00c567d1ba2a39 *R/MGDrivE-Graphics.R
7a7cf8d3c39aebd676c5c35141a8afd2 *R/MGDrivE-Releases.R
98f21cec46579be867b02f7c5d6c3b5a *R/MGDrivE-Setup.R
ad9f9f63fa127c6c2debfa187bc2ebfd *R/MGDrivE.R
abcb1b8aeb6fd07671c8e188baee97c7 *R/Network-Class.R
eb98d1d817ccd6e2ba53c5f796454377 *R/Network-Migration.R
940e81d0cd6127863e787825769d0f29 *R/Network-Parameters.R
0645e5b307458416bd85addf84722c69 *R/Network-Simulation.R
9de1594ce174d42c06cf72757928a437 *R/Patch-Class.R
940433e6abcc8085d05480a7e13d9a6e *R/Patch-Methods.R
9eef54827c87be888b1bff87ad4f5926 *R/Patch-Migration.R
1f1654d4f994407e1c336c24209a76ca *R/Patch-Simulation.R
693279912dbaa05ac9f1fcd92bd3a816 *R/RcppExports.R
baf2a63027e7d784a2e64c5910441c7c *R/data.R
6a4b18fbbfd73a8a9b08e43f62a8ce44 *R/zzz.R
cac8ede0a70e6396279485e152e0ec36 *README.md
5584a283753e8df43d05c928a84c75c1 *build/partial.rdb
4ddbf530046cf59865c614b7e02b5db5 *build/vignette.rds
39228ae9b06b3c1ae7f9a5c836e8634a *data/kernels.rda
749d2b032145ed3fbf34c79f73855af3 *data/moveMatAll2.rda
d77fe8fb07a734c26150bec0635b3aec *data/moveMatCascade3.rda
036eca9d2e5c64ac41f990e57728e81d *data/moveMatDiag.rda
b89038126ded89c387595e7ac13e228b *data/moveMatDiagOneCity.rda
181924774adf2d483b6f166ae67cae3f *data/moveMatDie.rda
f08970e2781c874db1dd53c1d7d8c054 *data/moveMatIndependent3.rda
7a7fd0b0d992edfed21df5ba50a0cf3a *data/moveMatMixedSpil.rda
349374cc0d220d2ca4dd73605ed27d96 *data/moveMatTaleOfTwoCities.rda
1808f2dc519c0d94c2ab2d89ceebc4e3 *data/moveMatTriDiagonal.rda
a119ca4fda39ae73eaa7b4d71cd52463 *data/moveMatTriple.rda
8dea3d1a0d86bcdce80091b58e86b39f *inst/CITATION
ad8bb7dac6c18bbda30f0baa74aa9c09 *inst/REFERENCES.bib
ce7cc4f6b2f2dc9e7c8aa4df9d8889ed *inst/doc/mgdrive_examples.R
b4fb5c01ced137af9f9e044d0cf2100a *inst/doc/mgdrive_examples.Rmd
ddb4767d28f22503f3d6cbb46f25447d *inst/doc/mgdrive_examples.html
4ff067aed7d96c0b00e99a737242457a *inst/doc/mgdrive_math.R
bca6d89f1715b7065db3c8c343eeb4c0 *inst/doc/mgdrive_math.Rmd
56514bf8b758254436104f1ab367de18 *inst/doc/mgdrive_math.html
937dbb3de70d538497f24ee7833d4e76 *inst/doc/mgdrive_run.R
0dadf54bf48996d0661b90ce6610ebb6 *inst/doc/mgdrive_run.Rmd
f68bc9f843af5360a0a28d48e0c7e488 *inst/doc/mgdrive_run.html
01c0638620af5029ca74e28067fb6baa *man/MGDrivE-Cube.Rd
f2e6e94edfa150bbba237ebebd210f5d *man/MGDrivE-Model.Rd
5b3f6ae4c77463f1407d2bbff17d988a *man/MGDrivE.Rd
cf248848b65ed2b67c4ae7ec572715ca *man/Network.Rd
0e417ef7ff9a7a1c7c19aad061cdac1e *man/Patch.Rd
e0840642ad257bd2d6c3a31193697d99 *man/aggregateFemales.Rd
bea3c66978dfac02be1a1269a63f13e0 *man/aggregateOutput.Rd
48df9b4b9057624a0953ae595ccbd9a6 *man/basicBatchMigration.Rd
5ed8304e69dc39c2bba2d047c611b83a *man/basicRepeatedReleases.Rd
342adeafdfc27209d093d98542033b65 *man/calcAquaticStageSurvivalProbability.Rd
0f9adafe44df3ae509627010d2988901 *man/calcAverageGenerationTime.Rd
7cb960815241864eb29285f0683f02b8 *man/calcCos.Rd
b03ba122a775b1a20e0cf45e86d02066 *man/calcDensityDependentDeathRate.Rd
afe3a1fd75b0cf99fff9953f11401766 *man/calcExpKernel.Rd
4e119d26e77fcec3182f1ccc92076c6b *man/calcGammaKernel.Rd
273df8f11461612a366372fafe2df088 *man/calcHaversine.Rd
6db162820c5375845236d6ad6cc15b44 *man/calcHurdleExpKernel.Rd
7b64380777d2737d912a8a64c1d47b8b *man/calcLarvalDist.Rd
a329017f7c63650a7f1e31091b7998eb *man/calcLarvalPopEquilibrium.Rd
5603aa6d3a5f0d71644e150a8f7faadd *man/calcLarvalStageMortalityRate.Rd
408e23f4e29d71e8b0209c0812254c81 *man/calcLognormalKernel.Rd
23fbc27d2ba8ee63c3d7b9f1297d6063 *man/calcOmega.Rd
8e0618060a41b41ac3ec3b4dea60d08a *man/calcPopulationGrowthRate.Rd
b6d895b388d4b9d2ce8de34c859916ae *man/calcQuantiles.Rd
12e6bbfdc7b80d794bbb1b6ea5df88ee *man/calcVinEll.Rd
32539e7dc4a9945a86d82041c7e83c66 *man/calcVinSph.Rd
4311ca0c02ea4158f3cade053d75f093 *man/calcZeroInflation.Rd
5f1305a0685855d239fc43d182c4cda2 *man/cube2csv.Rd
1a614cfdee7bbbfec4aaf75ea546d231 *man/cubeASmidler.Rd
b43c0b775167721f9376d09b098aa661 *man/cubeAlleleSail.Rd
37ae8760771bed72c545c9f7d87b911f *man/cubeCLEAVRMF.Rd
e7a085f2cf90a3e4ffe1fc7f22011829 *man/cubeCLEAVRX.Rd
b2a2c70e02ef44ef74dec29d7b178564 *man/cubeClvR.Rd
4c51c0e70a78fd403612add9768c85fc *man/cubeClvR2.Rd
6d022ec5e39e4a61ad9430a8d241c915 *man/cubeConfinableHoming.Rd
493975e79f98390cd4f41135a8a0615f *man/cubeConfinableHomingJOHN.Rd
f72ca5ff416d6a6781f62f3c4e67f90e *man/cubeConfinableHomingX.Rd
b9a11c731e4d9b9aafab0e614e06c974 *man/cubeECHACR.Rd
fd38b8f2b71ed86c2265f8d15aac3163 *man/cubeECHACRX.Rd
a3b17f0f16041e9422e44b9bb88aab4b *man/cubeHoming1RA.Rd
9d9c21736e9cb80f6da4901954cd55af *man/cubeHomingDrive.Rd
aa942e0e54974008e0d8471c96a07353 *man/cubeHomingDriveSM.Rd
89380ebadd94595075cd9b34739440af *man/cubeImmunizingReversalMF.Rd
ea179688bc0dcd271f8d191073df3072 *man/cubeImmunizingReversalX.Rd
63d36f1371c4514d93b122e3032cbe99 *man/cubeKillerRescue.Rd
1c9d561b0984fd37a7068311d681ad95 *man/cubeMEDEA.Rd
47e64db1219bc6300fa5a739a4ad4571 *man/cubeMendelian.Rd
ad435b3a7705c794485af49e4e86076d *man/cubeModifiers.Rd
83906a7279dbfb9490976c6cf5d1f846 *man/cubeOneLocusTA.Rd
b111f039c6ef3b6e1571bd23bd719370 *man/cubeRIDL.Rd
5a8e0d42fe2054e76a868348fdf6153a *man/cubeReciprocalTranslocations.Rd
eeea6f5eace53086abcf863de0fd22d4 *man/cubeSplitDrive.Rd
faefc45137f529ec9acd72409649c821 *man/cubeSplitDriveX.Rd
492b10b25eb53c0ffdd8749c33e5c9a1 *man/cubeSplitDriveY.Rd
138ace6391cc43f5a3ccfd67014d74cf *man/cubeTGD.Rd
1204035159d9d8db73ebd529b6cf4fdb *man/cubeTGDX.Rd
ebef169adf9be0ff1b9ffc9377429d65 *man/cubeTwoLocusTA.Rd
41069a93c625c74dfcfa30064d5b162b *man/cubeWolbachia.Rd
ecaa6fa1f25825424fa999d8ca42bd43 *man/cubeXHomingDeposition.Rd
b91e8dead8e69d640bc23f90da0003cf *man/cubeXShredderMF.Rd
37c689f4b8d9e01a2217469f41905203 *man/cubeXShredderY.Rd
db7df5c533e47fdede3075a1eb5cda6f *man/eraseDirectory.Rd
7c942c13307ffdc1d5d95cfc1d13adc7 *man/generateReleaseVector.Rd
7bbcaf2c7534e9451fc0ffada869bec4 *man/get_alpha_Network.Rd
0121685168ba0b673260147e269da3f4 *man/get_beta_Network.Rd
336a48190a6c3d8a585f7450d7b63592 *man/get_conF_Network.Rd
671fe9cf3664d44ce40998708bb977f7 *man/get_conM_Network.Rd
c2db42819e7327dfede00d7a2bc6afb6 *man/get_drivecubeindex_Network.Rd
def1249297929cab6c3f3be7d940bfee *man/get_eta_Network.Rd
fdfa40a6958fc7bdc154a281abc36dbc *man/get_femalePop_Patch.Rd
225bd45aab0b2a93c97d69389fe41392 *man/get_genotypesID_Network.Rd
d8fa289c4eb67564043c9054d15b2a27 *man/get_genotypesN_Network.Rd
3dedb14a83dd4fdcf536444c77fb0340 *man/get_malePop_Patch.Rd
e3f98230432a84a6847977d549e6e176 *man/get_muAd_Network.Rd
0f3759574d9cd1b068c38c4380fb2826 *man/get_muAq_Network.Rd
26e7fd057dad91008eef1dd45721610e *man/get_nPatch_Network.Rd
6988823b7af96f4b2adf3944d2fbb2a6 *man/get_omega_Network.Rd
999eddc1277405e59ea8a3d9c72923a4 *man/get_patchReleases_Network.Rd
d7cc923ad5b75bf5220bfb30abc93df9 *man/get_phi_Network.Rd
7a9f83f42b1a9d36111568b7220ab4ac *man/get_s_Network.Rd
3b65db66d8963f310bf1bb10ca98f56c *man/get_tNow_Network.Rd
83c5b826a72f3e12c09475f38050e153 *man/get_tau_Network.Rd
d8751331d9e30f8eafb4715f05260d36 *man/get_timeAq_Network.Rd
ec047c585f8aa86f935622de8c46555b *man/get_xiF_Network.Rd
37accb42f6053bd48fb781409c1dc2f1 *man/get_xiM_Network.Rd
3748eb80f200ecc2f6203dcc86ded1ab *man/ggColUtility.Rd
b53c88beb6610d0d81556e5aa4875530 *man/kernels.Rd
cab80d989a77cac8ecf1d4d8284e6814 *man/moveMatAll2.Rd
fc2cb9678f67279539632e3cc41c57d9 *man/moveMatCascade3.Rd
b167e969239eab9d2660f7a9c7188ea3 *man/moveMatDiag.Rd
15a1adc60244a3a8157e32d3e4928dca *man/moveMatDiagOneCity.Rd
75156df4e9e122e5ffcee3768d63db97 *man/moveMatDie.Rd
4ad848ce044d4c93be49a9994793dd07 *man/moveMatIndependent3.Rd
e4b294548eac94f1003d196b11bba724 *man/moveMatMixedSpil.Rd
f6c8613fb29d186fee2229a63aa2a5d6 *man/moveMatTaleOfTwoCities.Rd
d91755e962c3c05e55da7e19cdea321b *man/moveMatTriDiagonal.Rd
3029ec7c190aa33008cadbb4ed168555 *man/moveMatTriple.Rd
07815ddff3ed1189cd3ec8792bcc1198 *man/multRun_Network.Rd
8fc110185f80be04c446c4381f159c7b *man/normalise.Rd
179321366a6e50845982186776cf4a36 *man/oneDay_Migration_Deterministic_Network.Rd
6850c5c61af0d0af330f104cc82c2e1e *man/oneDay_Migration_Stochastic_Network.Rd
e562768a46d6d871cf9d8b7b0d416984 *man/oneDay_Network.Rd
d4dd38d339a5a0c84765f5809328ecc2 *man/oneDay_PopDynamics_Patch.Rd
a7a15a6afdc3026218e21ac5eebadad7 *man/oneDay_adultDeath_deterministic_Patch.Rd
badef07e864bc4f0198c44e5cfe86f29 *man/oneDay_adultDeath_stochastic_Patch.Rd
1f6cfb6a227a7b83b7d3883165db22b3 *man/oneDay_eggDM_deterministic_Patch.Rd
410a34f19e6c5175cf2e87c9459c4404 *man/oneDay_eggDM_stochastic_Patch.Rd
35d2eeedd3ace9628409c59f2cfe57cb *man/oneDay_eggReleases_Patch.Rd
9271d7ae5380f0a9ccab0e8c7eab2d4a *man/oneDay_initOutput_Patch.Rd
884547b56fa0917f2b3457260f0fe9d9 *man/oneDay_larvaDM_deterministic_Patch.Rd
cabf54d6b82cd9b6341e7ef134495ad6 *man/oneDay_larvaDM_stochastic_Patch.Rd
797181814cf8dc9ac902f509700d12ea *man/oneDay_mating_deterministic_Patch.Rd
bcab528a6c77bdfe11328436d0c13db3 *man/oneDay_mating_stochastic_Patch.Rd
f41bba3dce7e4b69005ba9a792f9cd64 *man/oneDay_migrationIn_Patch.Rd
b23f8251c57e616b4b9c443b3ea9bda0 *man/oneDay_oviposit_deterministic_Patch.Rd
e81b9f26cd1895f16d4277cd4bf659d6 *man/oneDay_oviposit_stochastic_Patch.Rd
dd9964c2d6a9b68d4ae0b40efd794443 *man/oneDay_pupaDM_deterministic_Patch.Rd
6b063514078d2d528ae4a5f58d81fd1f *man/oneDay_pupaDM_stochastic_Patch.Rd
c57bf2d7143ca43df5d613576d5a196c *man/oneDay_pupation_deterministic_Patch.Rd
9c4320d7ebc057ca7b25ef6eaa20ebfe *man/oneDay_pupation_stochastic_Patch.Rd
dd1d6098339ba6c9646ab6ee395c9346 *man/oneDay_releases_Patch.Rd
624b0040f64b03008c706b5a540a2dc2 *man/oneDay_writeOutput_Patch.Rd
794b8f82aaff7c794a786c85d31963b5 *man/oneRun_Network.Rd
0aac7d50feab314794b76454d19715ea *man/parameterizeMGDrivE.Rd
23b8e52e7be6e72d141265d216c68ee1 *man/plotMGDrivEMult.Rd
2ff659473a3de390a53cdcc5b5864ee2 *man/plotMGDrivESingle.Rd
3779946f4d43b9c45810a00b5c7eff44 *man/quantileC.Rd
59993d7e06e203b6aca9e837b5f93217 *man/rDirichlet.Rd
0a359a12e66a5103bcc0c4d82e752930 *man/reset_Network.Rd
cac899b1f5f993b4d117d05042247be6 *man/reset_Patch.Rd
9e4b0c77e63a90cb2682880d717473bd *man/retrieveOutput.Rd
6912a7383f737bd8be1f3f6d2e10ee5c *man/set_NetworkPointer_Patch.Rd
797cdf17906d783aaf25d818922dab48 *man/set_initialPopulation_Patch.Rd
de69ee26dedcb1c10d96f686dc678ecd *man/set_population_deterministic_Patch.Rd
327044de9a986a245a498714e6351d19 *man/set_population_stochastic_Patch.Rd
27cd61185074cfabdc3a7e1fadab3980 *man/setupMGDrivE.Rd
a5102933ac4a41e4560931d87285e350 *man/splitOutput.Rd
f793a4e6bf9f34551b2b8b38ab04f9e8 *src/MGDrivE-Auxilary.cpp
c5a526535196bbd6957f4f26bf1b689f *src/MGDrivE-DistanceFunctions.cpp
fdd900e02ecd12ce89ceb7f8af1e4b16 *src/MGDrivE-Kernels.cpp
7b53f1cb927f51157ae82f1dd3bd3046 *src/RcppExports.cpp
4d8d067eaef70654f31a8c9b2471fb58 *vignettes/diagram.jpg
9bf3e7df248ad2d4f1ca7b862c054e54 *vignettes/diagram.png
b4fb5c01ced137af9f9e044d0cf2100a *vignettes/mgdrive_examples.Rmd
bca6d89f1715b7065db3c8c343eeb4c0 *vignettes/mgdrive_math.Rmd
0dadf54bf48996d0661b90ce6610ebb6 *vignettes/mgdrive_run.Rmd
