9c6df7d214fd69d48d0d85e9785408eb *DESCRIPTION
c717b3868c5e6026caec288fe5e278c5 *NAMESPACE
47b5d7f9191f6464a0d094dba5cb6a99 *NEWS.md
91fa2617ed57242276274f2bdab72c3b *R/RcppExports.R
7782aeee7327d1e9f1583d57a799b461 *R/get_enviro_cor.R
e0085d19c961de114f01c82c338235a1 *R/get_residual_cor.R
aec0cf4b1fad40215aec0069ad675433 *R/hidden.R
4a9106b9aaf10b6a793160d6af2908c0 *R/jSDM-package.R
b08f577353210eaa5c0a3779f82c30fd *R/jSDM_binomial_logit.R
7249cb1a9b79d4cf5b19026063c98f90 *R/jSDM_binomial_probit.R
2d9f317bae0697795b62f2d1013701dd *R/jSDM_binomial_probit_long_format.R
3bba77727cbef747900786028ad1f3b1 *R/jSDM_binomial_probit_sp_constrained.R
b84c3fe8d7da7e9af5c793ab03be86b6 *R/jSDM_gaussian.R
b611ee0ba3bfe9a31ce0fd7219e902ed *R/jSDM_poisson_log.R
5e768c81e1bf4780a73417f48c7f617d *R/logit.R
73972545ebad4110dd0b1ae4d7954097 *R/plot_associations.R
ab85321b988820f76059200d32be8f14 *R/plot_residual_cor.R
7f395bef25939fb32ae015ca2e14773c *R/predict.jSDM.R
ba308afb0fcc7b90fb4d7abc2e9cb721 *R/zzz.R
9a10991c6043d515bba611031cdcd1b1 *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
b5c540ee9ea0b10e46214b0b0f139c7b *build/vignette.rds
aeeb1273555572fcee47e170ff49f9af *cleanup
3aa988c92df56b07afd81c7e30ca5021 *data/aravo.rda
ea54da027d96febadb663935df8eff0a *data/birds.rda
353d4ba566cb18779477140b1a172cc7 *data/eucalypts.rda
c23b854cba52385f62e3f254b4d1d4b7 *data/frogs.rda
7db96bc3e1591ce464c568440980c5a0 *data/fungi.rda
39a43189a5e687cfdf2e265b769f3f1e *data/madagascar.rda
906845bda0bdcc45e0bbca8e79cf12a4 *data/mites.rda
cf69598e0728f189311d0ceeb7f6523f *data/mosquitos.rda
da6f083d4d384b5ccfa279c8b8320e84 *inst/doc/jSDM.R
7c86d7cba404ba39c82f4cae2e0a326f *inst/doc/jSDM.Rmd
d845fb17a81efca9e598330548e5d365 *inst/doc/jSDM.html
f18f184f1b0fbb232d98030a0cbd0d58 *inst/doc/proof.R
0a46b8777661771879c27b807b026749 *inst/doc/proof.Rmd
6b917e3553932136ace28703051f3775 *inst/doc/proof.html
a175f2760e83f2b25d5d349337a6bf87 *man/aravo.Rd
04c3a690a6bc2a8e49da9f7eda88f20e *man/birds.Rd
c7f21d368219ddf50784dda69a96c78d *man/eucalypts.Rd
294cfb673b5056c7298d5ad5f7e4ac86 *man/figures/logo-cirad.svg
7a9d7a582777b73a1175acb3aaa193eb *man/figures/logo.png
2477a27c80ddc533a545a6d6aa33cc78 *man/frogs.Rd
fd7b727cfad633c016f996225c80d8da *man/fungi.Rd
092357f75df8655aaeac5762e83077be *man/get_enviro_cor.Rd
8e6e07a00d1900e1a38e0efed0a32f9d *man/get_residual_cor.Rd
4167887070b43b51acbe4a0a0a857eed *man/inv_logit.Rd
27d667ccb55676c6529b641a1cf05a67 *man/jSDM-package.Rd
7a5e68b753385b7ea82fac18fe5cc0e4 *man/jSDM_binomial_logit.Rd
09dfc12a219fd43df5d2f3050de90eae *man/jSDM_binomial_probit.Rd
21121bb42074a12d840324e9156c56b9 *man/jSDM_binomial_probit_long_format.Rd
23fe470dc9d8441333eecaf2021707de *man/jSDM_binomial_probit_sp_constrained.Rd
b5e1ef3965e3e8e5877309ef9e428c13 *man/jSDM_gaussian.Rd
ed76e59ec6364dbb67d0b1bda87ced05 *man/jSDM_poisson_log.Rd
c99906e41e7f64041a10a4d2df44eb3f *man/logit.Rd
4ab4dc95e53d080572fc67e5bad1ae07 *man/madagascar.Rd
3956bb1d8ac25866f850891a40de8e85 *man/mites.Rd
ec49e6ca962626a52ea4fe0031a3e1fe *man/mosquitos.Rd
f61ea562b8c54fb3751b37e2758b7dd4 *man/plot_associations.Rd
0fd7ae0184375af8d3eac5644714bac4 *man/plot_residual_cor.Rd
539a93be2a21cd7049339dc7fe505fd0 *man/predict.jSDM.Rd
f5cef9d187f811a205065ea48f28a779 *src/Makevars
45eae51b7abc82aaf0a32a6e46238d0a *src/Makevars.win
3281a654bb0e337725e2c75724856db5 *src/RcppExports.cpp
d74a58d54165fea62e49d03df4a16063 *src/Rcpp_jSDM_binomial_logit.cpp
adebd861cf6f4c21db25d29d6e19481a *src/Rcpp_jSDM_binomial_logit_fixed_site.cpp
cd52c4e254c30d61567a1daa34ab6194 *src/Rcpp_jSDM_binomial_logit_fixed_site_lv.cpp
52c6842f4c683ad8ccad19182ed49080 *src/Rcpp_jSDM_binomial_logit_lv.cpp
50a8070d7f65f028abef7f4040efe49c *src/Rcpp_jSDM_binomial_logit_rand_site.cpp
304c6001c2d0a9f79e444b4f996f2e1a *src/Rcpp_jSDM_binomial_logit_rand_site_lv.cpp
5f6e51562e1d8354bb87496fb09e71c0 *src/Rcpp_jSDM_binomial_logit_traits.cpp
caef57e73a13ab19f433c91b7cb3a02f *src/Rcpp_jSDM_binomial_logit_traits_fixed_site.cpp
8c07f6dbb3202c2d63d87cc187cdc569 *src/Rcpp_jSDM_binomial_logit_traits_fixed_site_lv.cpp
488ec6a51553ba4c5e4093e2689fb066 *src/Rcpp_jSDM_binomial_logit_traits_lv.cpp
ea22ec6c9d98a45c32d63488cd70b1d0 *src/Rcpp_jSDM_binomial_logit_traits_rand_site.cpp
d790688005ccdd6971185aab8efc0006 *src/Rcpp_jSDM_binomial_logit_traits_rand_site_lv.cpp
d76b173c8e08de20fa228e9942cef9c8 *src/Rcpp_jSDM_binomial_probit.cpp
db700a997a4455a95dfd46b26c5ddb93 *src/Rcpp_jSDM_binomial_probit_fixed_site.cpp
7a7fd98d980e9b4863756612dcd12f3c *src/Rcpp_jSDM_binomial_probit_fixed_site_long_format.cpp
382a7667a0da88edb525c299b7a61834 *src/Rcpp_jSDM_binomial_probit_fixed_site_lv.cpp
9452a7e81344e82b73fe301552088f86 *src/Rcpp_jSDM_binomial_probit_fixed_site_lv_long_format.cpp
21adee4b9a0763eb62369e9c493fdc19 *src/Rcpp_jSDM_binomial_probit_long_format.cpp
bf8f4059a33005b37d63d6074319fabc *src/Rcpp_jSDM_binomial_probit_lv.cpp
206b7b2508f91c38b4dfbf2987567317 *src/Rcpp_jSDM_binomial_probit_lv_long_format.cpp
7927c23922c1a0481db7dadc991a86f0 *src/Rcpp_jSDM_binomial_probit_rand_site.cpp
5e60df508b3db6b9a86e83e72b96e4d4 *src/Rcpp_jSDM_binomial_probit_rand_site_long_format.cpp
89cf815fd14afc8b3c1699dfc5531016 *src/Rcpp_jSDM_binomial_probit_rand_site_lv.cpp
df4eb94cd30b45c8cd6032016a7a3280 *src/Rcpp_jSDM_binomial_probit_rand_site_lv_long_format.cpp
72d20753b11a91b421806a609a410120 *src/Rcpp_jSDM_binomial_probit_traits.cpp
761d549215658c45900378e9750b9d83 *src/Rcpp_jSDM_binomial_probit_traits_fixed_site.cpp
ae7af387e36ab77854c58c3df0923ce0 *src/Rcpp_jSDM_binomial_probit_traits_fixed_site_long_format.cpp
410e42118e55b35cf51765d1f756b8c1 *src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv.cpp
822e2cba1b3a7f90cb1b6744392dea06 *src/Rcpp_jSDM_binomial_probit_traits_fixed_site_lv_long_format.cpp
7c899f0f4fcea0c2b67beffebfb1839a *src/Rcpp_jSDM_binomial_probit_traits_long_format.cpp
ca2033ffdb51c470a41c283192b0673d *src/Rcpp_jSDM_binomial_probit_traits_lv.cpp
44b184ad1d48f854039c845009057721 *src/Rcpp_jSDM_binomial_probit_traits_lv_long_format.cpp
5b4dc2808e95683145fddf9f1ca951e5 *src/Rcpp_jSDM_binomial_probit_traits_rand_site.cpp
4f7f3116f804e52709e7077368417644 *src/Rcpp_jSDM_binomial_probit_traits_rand_site_long_format.cpp
12556f496247f5af153faf812312e982 *src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv.cpp
1280f9d8f8c71e17e5b340a46659dce3 *src/Rcpp_jSDM_binomial_probit_traits_rand_site_lv_long_format.cpp
dcc1bde38c4efd0395fb0f6e487bae1e *src/Rcpp_jSDM_gaussian.cpp
a4e475fbca947443eeeb2426f145c059 *src/Rcpp_jSDM_gaussian_fixed_site.cpp
301537ad1f284e67d6e6e47d563feb09 *src/Rcpp_jSDM_gaussian_fixed_site_lv.cpp
9973a491de5c53fec3cdc4ab5cdeea94 *src/Rcpp_jSDM_gaussian_lv.cpp
c0a839955d8853b9c902647d17a070e1 *src/Rcpp_jSDM_gaussian_rand_site.cpp
f3fe88e3f9cd246b7bd7e9c992408f4e *src/Rcpp_jSDM_gaussian_rand_site_lv.cpp
e5a47ac853b90d66591212ebc9056ca3 *src/Rcpp_jSDM_gaussian_traits.cpp
f9a060309cda4813721c21de4495c1f8 *src/Rcpp_jSDM_gaussian_traits_fixed_site.cpp
80a421dd5f8d91e2afc4361b13482389 *src/Rcpp_jSDM_gaussian_traits_fixed_site_lv.cpp
daf9e5a4f9831cad57b532037a405a4f *src/Rcpp_jSDM_gaussian_traits_lv.cpp
fae2914c5be7bd014abd9750ba2fa166 *src/Rcpp_jSDM_gaussian_traits_rand_site.cpp
e094292f8414c4cfc92d0be8b07812a5 *src/Rcpp_jSDM_gaussian_traits_rand_site_lv.cpp
799371c57bece5b70a74ea3004c61fe9 *src/Rcpp_jSDM_poisson_log.cpp
b1493d340448fe8fee3692d98792512c *src/Rcpp_jSDM_poisson_log_fixed_site.cpp
e8b2d72c9d96968be548f6ee74eda777 *src/Rcpp_jSDM_poisson_log_fixed_site_lv.cpp
9c9abdf095ac3a66307f6098e459af08 *src/Rcpp_jSDM_poisson_log_lv.cpp
93086f13114bdfcc8fd6dbf6e15383d0 *src/Rcpp_jSDM_poisson_log_rand_site.cpp
7169d406d2fb35859d23024a85314aee *src/Rcpp_jSDM_poisson_log_rand_site_lv.cpp
27ea968df1da820206c128ea3910c30e *src/Rcpp_jSDM_poisson_log_traits.cpp
958461bc13a1e0a98c277e1585d89acf *src/Rcpp_jSDM_poisson_log_traits_fixed_site.cpp
d9268d366beb4e20d7c82c9a7150d3cc *src/Rcpp_jSDM_poisson_log_traits_fixed_site_lv.cpp
92bbdaaf27e307e3dc54a969ea5dc583 *src/Rcpp_jSDM_poisson_log_traits_lv.cpp
582b57840a0a29bf3de5d907a28195e0 *src/Rcpp_jSDM_poisson_log_traits_rand_site.cpp
90d9a1b25a5ede7f8f5704cedd015826 *src/Rcpp_jSDM_poisson_log_traits_rand_site_lv.cpp
6b0bd371b6f63f75597bcc5c957f6eaa *src/Rcpp_jSDM_useful.cpp
96fabf52cffe3d965a2ac227c781fce1 *src/Rcpp_jSDM_useful.h
cb034ac9a2c1c262893b4dad48853941 *tests/testthat.R
ee5e566d1b726c42b4d20b6be0ae8a32 *tests/testthat/test-get_enviro_cor.R
566746928aca19523dcdbbe267e7845a *tests/testthat/test-get_residual_cor.R
babfd507ed56899f1d52d8fb4a0b379a *tests/testthat/test-hidden.R
7656e409c2880eb06979aedd2cc920d9 *tests/testthat/test-inv_logit.R
10ccddf5fa9b3ebf54fdfe4ba8bfba12 *tests/testthat/test-jSDM_binomial_logit.R
6cf324bdb7865bedbf0fa6b24ac8882a *tests/testthat/test-jSDM_binomial_probit.R
ed8132f20788aaa101d11508cc12aa57 *tests/testthat/test-jSDM_binomial_probit_long_format.R
99217cc9f544a604d9b0713018d97b87 *tests/testthat/test-jSDM_binomial_probit_sp_constrained.R
cdd3f78a721023a8e0d27dc85e5f8447 *tests/testthat/test-jSDM_gaussian.R
12ef7f2b0b16b2a9c7889910be87268a *tests/testthat/test-jSDM_poisson_log.R
3e88c94634f80611113899a152ff4b89 *tests/testthat/test-logit.R
828128c8593a19625d37dc8d8dbb332a *tests/testthat/test-predict.jSDM.R
848c9957cc3d7ff925bb1a0ce5807d7f *vignettes/bib/biblio-jSDM.bib
b917b5aaefbf3265de6689f7d3948c4e *vignettes/bib/jae.bst
b87a3db5150aab2aeb10449d55360844 *vignettes/bib/journal-of-applied-ecology.csl
bdca9c0a3e33ecd6b824d973d6b5f43f *vignettes/figures/DAG-jSDM-rand.png
97815d1fa1c3f5c04afc38ac69d2d5ef *vignettes/figures/Eucalyptus_.jpg
554c53295628bf1164183bbe6dcc286e *vignettes/figures/Frogs_.jpg
0ce0cd359888bd8c236e14223ab31482 *vignettes/figures/Fungi_.jpg
86ad5278affa65caf896531992cfa82d *vignettes/figures/Litoria_ewingii.jpg
e1832db447248b3b4450578342103745 *vignettes/figures/Mosquitos_.jpg
b6fda02b55230c3dc2169257832cd5e4 *vignettes/figures/Oribatid_mites.jpg
3fccfb60512142b51f77aae474524353 *vignettes/figures/alpine_plants.png
0b6493d8bf824fd113e7662a99e386f5 *vignettes/figures/alpine_plants_.png
5d865b42b019330ec12ec2a97831e5cd *vignettes/figures/birds.jpg
24dd447b8e7f172d69c07aa9264d270d *vignettes/figures/birds_.jpg
c31ad862ebb507a111924907005b5305 *vignettes/figures/des.jpg
4855f2c4ccab15ef7ee441b69e15b0ad *vignettes/figures/oribatid-mites.png
8dade6e6efaa30afa56a29d915a7610e *vignettes/figures/swiss_breeding_birds_atlas.jpg
7c86d7cba404ba39c82f4cae2e0a326f *vignettes/jSDM.Rmd
0a46b8777661771879c27b807b026749 *vignettes/proof.Rmd
