Last updated on 2025-12-06 18:49:55 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.6 | 4.79 | 122.85 | 127.64 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 3.84 | 82.32 | 86.16 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.6 | 14.00 | 193.33 | 207.33 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.6 | 28.00 | 211.54 | 239.54 | NOTE | |
| r-devel-windows-x86_64 | 1.0.6 | 6.00 | 154.00 | 160.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.6 | 5.97 | 117.70 | 123.67 | NOTE | |
| r-release-linux-x86_64 | 1.0.6 | 5.09 | 118.75 | 123.84 | NOTE | |
| r-release-macos-arm64 | 1.0.6 | NOTE | ||||
| r-release-macos-x86_64 | 1.0.6 | 7.00 | 54.00 | 61.00 | NOTE | |
| r-release-windows-x86_64 | 1.0.6 | 7.00 | 154.00 | 161.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.6 | NOTE | ||||
| r-oldrel-macos-x86_64 | 1.0.6 | 4.00 | 145.00 | 149.00 | NOTE | |
| r-oldrel-windows-x86_64 | 1.0.6 | 9.00 | 185.00 | 194.00 | NOTE |
Version: 1.0.6
Check: Rd files
Result: NOTE
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.6
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'canvasXpress', 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(DGEobj.utils)
>
> test_check("DGEobj.utils")
Loading required package: DGEobj
Loading required package: statmod
Loading required package: RNASeqPower
Loading required package: edgeR
Loading required package: limma
Saving _problems/test_runEdgeRNorm-48.R
Saving _problems/test_runEdgeRNorm-60.R
Saving _problems/test_runEdgeRNorm-70.R
Saving _problems/test_runPower-27.R
Saving _problems/test_runPower-28.R
Saving _problems/test_runPower-29.R
Saving _problems/test_runPower-33.R
Saving _problems/test_runPower-34.R
Saving _problems/test_runPower-35.R
Number of significant surrogate variables is: 11
Iteration (out of 5 ):1 2 3 4 5 Number of significant surrogate variables is: 10
Iteration (out of 5 ):1 2 3 4 5 Number of significant surrogate variables is: 43
Iteration (out of 5 ):[ FAIL 9 | WARN 1 | SKIP 1 | PASS 322 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test_runVoom.R:5:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_runEdgeRNorm.R:48:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runEdgeRNorm.R:60:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runEdgeRNorm.R:70:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:27:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$ROC` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:28:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$NvP` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:29:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$PowerData` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:33:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$ROC` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:34:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$NvP` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:35:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$PowerData` to be an S3 object.
Actual OO type: none.
[ FAIL 9 | WARN 1 | SKIP 1 | PASS 322 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘zFPKM’
Flavor: r-oldrel-macos-arm64