Last updated on 2025-10-16 20:49:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3 | 54.56 | 623.13 | 677.69 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.4.0 | 38.75 | 485.97 | 524.72 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.4.0 | 1179.27 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.4.0 | 1144.46 | OK | |||
| r-devel-windows-x86_64 | 2.3 | 53.00 | 610.00 | 663.00 | ERROR | |
| r-patched-linux-x86_64 | 2.3 | 49.76 | 593.29 | 643.05 | OK | |
| r-release-linux-x86_64 | 2.3 | 47.89 | 593.00 | 640.89 | OK | |
| r-release-macos-arm64 | 2.3 | 271.00 | OK | |||
| r-release-macos-x86_64 | 2.4.0 | 533.00 | OK | |||
| r-release-windows-x86_64 | 2.4.0 | 47.00 | 660.00 | 707.00 | OK | |
| r-oldrel-macos-arm64 | 2.3 | 196.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.4.0 | 824.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 2.3 | 73.00 | 768.00 | 841.00 | OK |
Version: 2.3
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.3
Check: examples
Result: ERROR
Running examples in 'dowser-Ex.R' failed
The error most likely occurred in:
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in .call_fun_in_pwalign("pairwiseAlignment", ...) :
pairwiseAlignment() has moved from Biostrings to the pwalign package, and is
formally defunct in Biostrings >= 2.77.1. Please call
pwalign::pairwiseAlignment() to get rid of this error.
Calls: print ... maskCodons -> <Anonymous> -> .call_fun_in_pwalign -> .Defunct
Execution halted
Flavor: r-devel-windows-x86_64
Version: 2.4.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pwalign’
Flavor: r-oldrel-macos-x86_64
Version: 2.4.0
Check: examples
Result: ERROR
Running examples in ‘dowser-Ex.R’ failed
The error most likely occurred in:
> ### Name: maskCodons
> ### Title: 'maskCodons' Masks codons split by insertions
> ### Aliases: maskCodons
>
> ### ** Examples
>
> s = "ATCATCATC..."
> q = "ATCTTTATCATC"
> print(maskCodons(1,q,s,TRUE))
Error in loadNamespace(x) : there is no package called ‘pwalign’
Calls: print ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-oldrel-macos-x86_64