Last updated on 2026-01-04 19:50:06 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 11.95 | 266.53 | 278.48 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.95 | 219.27 | 230.22 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 25.00 | 289.70 | 314.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 27.00 | 350.69 | 377.69 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 22.00 | 193.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 14.71 | 269.87 | 284.58 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.05 | 254.30 | 269.35 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 189.00 | 199.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 20.00 | 190.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 10.00 | 283.00 | 293.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 23.00 | 248.00 | 271.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [124s/147s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.047, elapsed: 2.374 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.521, system: 0.133, elapsed: 12.271 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.242, system: 0.021, elapsed: 0.316 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.924, system: 0.853, elapsed: 10.096 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.006, elapsed: 0.217 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.050, system: 1.086, elapsed: 26.004 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.614, system: 0.041, elapsed: 1.875 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.446, system: 0.103, elapsed: 10.607 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.016, elapsed: 1.173 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.139, system: 0.724, elapsed: 49.217 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.005, elapsed: 0.207 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.302, system: 0.931, elapsed: 64.019 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.658, system: 0.046, elapsed: 1.848 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.605, system: 0.134, elapsed: 12.226 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.243, system: 0.020, elapsed: 0.294 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.308, system: 0.898, elapsed: 9.078 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.004, elapsed: 0.170 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.243, system: 0.237, elapsed: 0.864 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 23.129, system: 1.393, elapsed: 25.284 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.735, system: 0.045, elapsed: 1.434 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.704, system: 0.043, elapsed: 8.707 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.509, system: 0.023, elapsed: 0.193 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 11.576, system: 0.807, elapsed: 4.313 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.172 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 27.067, system: 1.199, elapsed: 10.632 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 50.901, system: 2.166, elapsed: 26.073 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [88s/209s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.758, system: 0.073, elapsed: 2.971 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.731, system: 0.207, elapsed: 15.088 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.204, system: 0.020, elapsed: 0.307 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.082, system: 0.438, elapsed: 5.210 seconds]
Computing values for grid cells...
... done. [user: 0.151, system: 0.003, elapsed: 0.153 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.478, system: 0.772, elapsed: 24.583 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.276, system: 0.021, elapsed: 1.298 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.039, system: 0.382, elapsed: 14.225 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.020, elapsed: 0.276 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.593, system: 0.536, elapsed: 19.176 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.005, elapsed: 0.516 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.820, system: 0.995, elapsed: 36.433 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.618, system: 0.037, elapsed: 4.885 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.690, system: 0.090, elapsed: 26.010 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.016, elapsed: 0.579 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.353, system: 0.415, elapsed: 12.876 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.005, elapsed: 0.535 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.208, system: 0.321, elapsed: 2.115 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.919, system: 0.911, elapsed: 48.926 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.661, system: 0.037, elapsed: 4.966 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.703, system: 0.098, elapsed: 28.947 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.202, system: 0.016, elapsed: 0.544 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.306, system: 0.428, elapsed: 13.329 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.005, elapsed: 0.542 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.756, system: 0.529, elapsed: 34.950 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.485, system: 1.141, elapsed: 85.294 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64