Last updated on 2025-12-15 07:49:55 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.89 | 764.75 | 803.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 20.57 | 485.03 | 505.60 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 69.00 | 1313.21 | 1382.21 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 66.00 | 1250.56 | 1316.56 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 54.55 | 699.28 | 753.83 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.47 | 698.05 | 734.52 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 525.00 | 562.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 538.00 | 563.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 642.00 | 696.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-15 16:30:10.063721: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.06402: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.067779: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.074755: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.085922: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.086052: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.088118: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.093858: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.10075: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.100926: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.105356: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.120702: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.121168: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.126343: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.126479: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.130889: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.145901: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.146329: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.168434: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.168552: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.172935: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.208808: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.22512: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.225319: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.233826: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.314489: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.31569: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.346313: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.346449: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.348775: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.354792: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.361048: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.361216: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.365945: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.380895: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.381306: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.412369: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.412506: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.415147: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.421789: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.432871: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.433076: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.437655: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.452686: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.453073: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.47837: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.47852: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.480717: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.487095: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.498309: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.4985: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.502835: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.518025: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.518415: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.536012: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.536157: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.538466: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.544725: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.554788: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.554957: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.559339: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.574418: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.574813: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.591905: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.592047: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.594455: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.600755: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.611914: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.612116: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.616908: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.63177: embedding
> test_pipeop_isomap.R: 2025-12-15 16:30:10.632244: DONE
> test_pipeop_isomap.R: 2025-12-15 16:30:10.654011: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.654168: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.656664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.662806: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.679573: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.679707: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.687815: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.693587: Classical Scaling
> test_pipeop_isomap.R: 2025-12-15 16:30:10.698229: Isomap START
> test_pipeop_isomap.R: 2025-12-15 16:30:10.698321: constructing knn graph
> test_pipeop_isomap.R: 2025-12-15 16:30:10.70045: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-15 16:30:10.705858: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [305s/275s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-14 22:28:59.431662: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:28:59.432194: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:28:59.448658: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:28:59.491101: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:28:59.56094: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:28:59.561237: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:28:59.571687: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:28:59.60234: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:28:59.627852: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:28:59.636672: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:28:59.650035: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:28:59.688679: embedding
> test_pipeop_isomap.R: 2025-12-14 22:28:59.689798: DONE
> test_pipeop_isomap.R: 2025-12-14 22:28:59.704777: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:28:59.705082: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:28:59.718223: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:28:59.75694: embedding
> test_pipeop_isomap.R: 2025-12-14 22:28:59.758754: DONE
> test_pipeop_isomap.R: 2025-12-14 22:28:59.925101: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:28:59.925397: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:28:59.949732: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:00.106251: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:00.159234: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:00.160731: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:00.240087: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:00.581175: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:00.584851: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:00.777927: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:00.778227: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:00.785923: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:00.815409: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:00.865147: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:00.865575: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:00.888287: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:00.955898: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:00.957321: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:01.11418: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.121232: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.127984: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:01.163351: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:01.233822: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.234264: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.261197: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:01.341821: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:01.373615: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:01.466303: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.46661: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.473042: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:01.503701: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:01.559881: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.560928: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.588615: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:01.654285: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:01.655373: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:01.763568: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.764856: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.785838: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:01.833175: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:01.906766: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:01.907186: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:01.944873: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.024412: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:02.025537: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:02.118508: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:02.118817: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:02.132523: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.155701: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:02.212152: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-14 22:29:02.225926: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:02.244743: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.325237: embedding
> test_pipeop_isomap.R: 2025-12-14 22:29:02.326399: DONE
> test_pipeop_isomap.R: 2025-12-14 22:29:02.438682: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:02.438972: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:02.456186: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.495483: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:02.584648: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:02.584945: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:02.602997: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.635933: Classical Scaling
> test_pipeop_isomap.R: 2025-12-14 22:29:02.68504: Isomap START
> test_pipeop_isomap.R: 2025-12-14 22:29:02.685332: constructing knn graph
> test_pipeop_isomap.R: 2025-12-14 22:29:02.702555: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-14 22:29:02.725756: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [270s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-12 19:20:25.870782: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:25.87195: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:25.887949: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:25.912321: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:25.974434: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:25.975244: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:25.986304: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.007274: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:26.049057: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.050026: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.071395: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.113423: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.11517: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.148747: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.149405: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.188813: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.240473: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.242336: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.340739: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.341192: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.357552: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.442076: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:26.47549: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.476157: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.523032: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.757585: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.762056: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.940653: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.941359: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.952443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.976071: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.032392: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.033331: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.052443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.099888: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.101545: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.298994: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.299604: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.308668: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.325218: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.372726: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.373643: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.468466: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.518838: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.520794: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.63686: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.637492: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.648632: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.665086: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.725201: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.726059: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.747256: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.79538: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.79725: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.898375: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.898864: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.91084: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.948593: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.027047: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.028026: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.046903: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.09513: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:28.096837: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:28.205505: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.206151: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.216088: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.237871: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.301304: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.301932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.315374: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.35887: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:28.360566: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:28.50801: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.50853: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.518106: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.540897: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.651146: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.651824: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.661601: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.683349: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.715768: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.716413: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.72631: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.748001: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3961464')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64