Last updated on 2026-01-16 07:49:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 39.03 | 810.91 | 849.94 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.99 | 530.15 | 552.14 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 71.00 | 1391.17 | 1462.17 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.91 | 731.70 | 782.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 38.01 | 740.60 | 778.61 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 542.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 122.00 | 130.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 721.00 | 746.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 60.00 | 700.00 | 760.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 15:37:57.156186: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.156494: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.159745: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.166044: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.423652: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.423885: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.426265: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.431825: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.439123: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.439329: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.444394: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.461243: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.461736: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.468634: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.468786: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.473939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.490195: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.490655: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.509961: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.510115: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.514797: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.552341: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.561597: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.56177: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.571619: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.659417: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.666099: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.701823: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.70197: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.704551: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.711196: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.71964: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.719874: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.725563: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.741708: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.742234: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.779341: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.779486: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.781969: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.788619: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.801028: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.801215: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.806266: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.820666: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.821041: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.840391: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.840532: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.849798: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.856408: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.868928: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.869193: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.874174: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.890939: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.891354: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.910112: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.910234: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.912604: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.91948: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.932006: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.932214: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.937445: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.953185: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:57.953629: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:57.974828: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.974962: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.976926: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:57.982677: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:57.99343: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 15:37:57.993632: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:57.998422: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:58.013909: embedding
> test_pipeop_isomap.R: 2026-01-16 15:37:58.014287: DONE
> test_pipeop_isomap.R: 2026-01-16 15:37:58.043488: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:58.043685: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:58.045994: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:58.051736: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:58.067124: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:58.067281: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:58.069891: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:58.076448: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 15:37:58.082382: Isomap START
> test_pipeop_isomap.R: 2026-01-16 15:37:58.082509: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 15:37:58.084827: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 15:37:58.090757: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_dictionary.R:7:3',
'test_GraphLearner.R:5:3', 'test_GraphLearner.R:221:3',
'test_GraphLearner.R:343:3', 'test_GraphLearner.R:408:3',
'test_GraphLearner.R:571:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [320s/436s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R:
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 00:55:38.410818: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:38.427467: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:38.436563: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:38.507709: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:38.639988: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:38.640285: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:38.658847: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:38.690513: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:38.757051: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:38.757485: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:38.809758: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:38.936652: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:38.968944: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:39.041915: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:39.04223: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:39.10362: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:39.215058: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:39.217467: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:39.371269: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:39.371571: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:39.444252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:39.706079: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:39.802965: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:39.804642: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:39.895056: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:40.513572: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:40.5192: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:40.858748: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:40.859076: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:40.888018: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:40.942993: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:41.017843: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:41.018275: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:41.089634: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:41.40954: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:41.410666: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:41.802759: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:41.803106: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:41.841091: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:41.913859: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:42.088144: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:42.088598: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:42.196983: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:42.363237: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:42.365547: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:42.565854: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:42.566158: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:42.605107: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:42.675084: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:42.801115: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:42.802643: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:42.843354: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:42.981546: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:43.012696: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:43.214331: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:43.214639: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:43.249048: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:43.344466: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:43.526229: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:43.526693: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:43.567377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:43.740437: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:43.741603: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:44.014988: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:44.017219: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:44.048781: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:44.13981: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:44.274513: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 00:55:44.274974: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:44.362846: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:44.529329: embedding
> test_pipeop_isomap.R: 2026-01-16 00:55:44.530555: DONE
> test_pipeop_isomap.R: 2026-01-16 00:55:44.808697: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:44.809022: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:44.851965: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:44.922387: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:45.205418: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:45.205715: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:45.212449: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:45.293216: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 00:55:45.370447: Isomap START
> test_pipeop_isomap.R: 2026-01-16 00:55:45.370755: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 00:55:45.377333: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 00:55:45.45527: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_quantilebin.R:5:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [304s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-13 08:41:20.362144: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.363272: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.378263: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.399997: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476046: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.476791: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.490232: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.513253: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:20.562892: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.563861: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.592648: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.648682: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.650832: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.703491: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.704282: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.728654: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:20.778332: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:20.780168: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903257: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:20.903948: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:20.925685: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.048574: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.11836: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.119362: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.177825: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.417464: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.423429: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:21.664976: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.665706: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.677052: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.698993: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:21.753646: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:21.754913: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:21.777892: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:21.825633: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:21.827413: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.049494: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.050115: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.061357: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.086868: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.17783: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.179136: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.222526: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.275889: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.277892: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.416591: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.417235: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.42788: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.450468: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.528851: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.529866: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.549407: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.594044: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.596101: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:22.708975: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.709602: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.71999: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.742911: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:22.812856: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:22.813732: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:22.835555: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:22.887232: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:22.889139: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.043632: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.044395: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.058142: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.081035: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.164365: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.165408: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.191977: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.241205: embedding
> test_pipeop_isomap.R: 2026-01-13 08:41:23.243225: DONE
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390244: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.390759: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.400814: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.418861: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546148: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.546843: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.559675: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.582483: Classical Scaling
> test_pipeop_isomap.R: 2026-01-13 08:41:23.612881: Isomap START
> test_pipeop_isomap.R: 2026-01-13 08:41:23.613325: constructing knn graph
> test_pipeop_isomap.R: 2026-01-13 08:41:23.623472: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-13 08:41:23.646108: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_scale.R:6:3',
'test_pipeop_scale.R:10:3', 'test_pipeop_scalemaxabs.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64