Last updated on 2025-09-23 08:49:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.5 | 22.60 | 165.48 | 188.08 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.5 | 15.07 | 116.50 | 131.57 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.5 | 250.57 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.5 | 286.85 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.5 | 26.00 | 151.00 | 177.00 | OK | |
| r-patched-linux-x86_64 | 1.0.5 | 21.67 | 156.11 | 177.78 | ERROR | |
| r-release-linux-x86_64 | 1.0.5 | 20.34 | 155.58 | 175.92 | ERROR | |
| r-release-macos-arm64 | 1.0.5 | 102.00 | OK | |||
| r-release-macos-x86_64 | 1.0.5 | 142.00 | OK | |||
| r-release-windows-x86_64 | 1.0.5 | 27.00 | 162.00 | 189.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | 92.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.5 | 136.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.5 | 35.00 | 214.00 | 249.00 | ERROR |
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.0904933643 -0.0429612460
2 I2 -0.0429612460 -0.0004701139
3 I3 -0.0004701139 0.0269218201
4 I4 0.0269218201 0.0695659128
5 I5 0.0695659128 0.0991303484
6 I6 0.0991303484 0.1270001208
7 I7 0.1270001208 0.1860772623
8 I8 0.1860772623 0.2231568034
9 I9 0.2231568034 0.2764816031
10 I10 0.2764816031 0.3778054308
11 I11 0.3778054308 0.4804615215
12 I12 0.4804615215 0.5639658113
13 I13 0.5639658113 0.6924297127
14 I14 0.6924297127 0.8167813773
15 I15 0.8167813773 1.0583192071
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.3 0.28 0.12 0.16 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0 0 0 0
x1=0.5 0.0 0.00 0.00 0.00 0.00 0.06 0.16 0.30 0.24 0.24 0.00 0 0 0 0
x1=-0.5 0.0 0.00 0.00 0.00 0.00 0.00 0.06 0.12 0.30 0.28 0.24 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.4777731 -1.4759963
2 I2 -1.4759963 -0.8618813
3 I3 -0.8618813 -0.6305007
4 I4 -0.6305007 -0.3971783
5 I5 -0.3971783 -0.2405315
6 I6 -0.2405315 -0.1105074
7 I7 -0.1105074 0.1386220
8 I8 0.1386220 0.5325501
9 I9 0.5325501 0.8652280
10 I10 0.8652280 1.3417137
11 I11 1.3417137 2.1376587
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0 0.06 0.06 0.11 2.220446e-16 0.18 0.15 0.11 0 0.33
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.08645898 -1.65444091
2 I2 -1.65444091 -1.24996215
3 I3 -1.24996215 -0.90130395
4 I4 -0.90130395 -0.36001306
5 I5 -0.36001306 -0.15449859
6 I6 -0.15449859 0.09838479
7 I7 0.09838479 0.34771012
8 I8 0.34771012 0.61937907
9 I9 0.61937907 0.91556481
10 I10 0.91556481 1.23350740
11 I11 1.23350740 2.49865818
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0.1190909 0.2209091 0.22 0 0 0 0.22 0.11 0 0.11
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.2595 0.507
q(x2,x1) 0.2610 0.455
max.dependence 0.2610 0.699
a p.values
asymmetry -0.0015 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [8s/9s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.08299629 -0.03647768
2 I2 -0.03647768 0.01280287
3 I3 0.01280287 0.05173721
4 I4 0.05173721 0.08228450
5 I5 0.08228450 0.10312708
6 I6 0.10312708 0.14310673
7 I7 0.14310673 0.19870276
8 I8 0.19870276 0.29112091
9 I9 0.29112091 0.40340276
10 I10 0.40340276 0.50394368
11 I11 0.50394368 0.59003161
12 I12 0.59003161 0.68008513
13 I13 0.68008513 0.81735180
14 I14 0.81735180 0.89626151
15 I15 0.89626151 1.05911961
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.4 0.18 0.24 0.12 0.06 0.00 0.00 0.00 0.00 0 0 0 0 0 0
x1=0.5 0.0 0.00 0.00 0.00 0.06 0.18 0.26 0.32 0.18 0 0 0 0 0 0
x1=-0.5 0.0 0.00 0.00 0.06 0.02 0.12 0.30 0.30 0.20 0 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.0849257 -1.2608422
2 I2 -1.2608422 -0.9479829
3 I3 -0.9479829 -0.6556985
4 I4 -0.6556985 -0.3444399
5 I5 -0.3444399 -0.1379363
6 I6 -0.1379363 0.1845316
7 I7 0.1845316 0.3466491
8 I8 0.3466491 0.6475209
9 I9 0.6475209 0.8678671
10 I10 0.8678671 1.2498751
11 I11 1.2498751 2.4445537
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0 0.22 0 0.11 0.22 0.07 0.1 0.11 0.1645455 0.005454545
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.21193439 -1.16573573
2 I2 -1.16573573 -0.67457168
3 I3 -0.67457168 -0.40791382
4 I4 -0.40791382 -0.23313068
5 I5 -0.23313068 -0.13793720
6 I6 -0.13793720 -0.04047649
7 I7 -0.04047649 0.30072944
8 I8 0.30072944 0.75536364
9 I9 0.75536364 0.89351836
10 I10 0.89351836 1.16868238
11 I11 1.16868238 2.96020327
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.12 0.1 0.11 0.17 0.11 0.06 0.11 0.11 0 0.11 1.110223e-16
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.228 0.775
q(x2,x1) 0.276 0.341
max.dependence 0.276 0.504
a p.values
asymmetry -0.048 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.08758418 -0.03428511
2 I2 -0.03428511 0.01149303
3 I3 0.01149303 0.05177759
4 I4 0.05177759 0.08898824
5 I5 0.08898824 0.11064741
6 I6 0.11064741 0.14243489
7 I7 0.14243489 0.19068598
8 I8 0.19068598 0.27288199
9 I9 0.27288199 0.35158872
10 I10 0.35158872 0.44450781
11 I11 0.44450781 0.51243571
12 I12 0.51243571 0.64363766
13 I13 0.64363766 0.77399079
14 I14 0.77399079 0.87429758
15 I15 0.87429758 1.07690276
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.26 0.14 0.3 0.24 0.06 0.00 0.00 0.00 0.00 0.00 0 0 0 0 0
x1=0.5 0.00 0.00 0.0 0.00 0.00 0.12 0.04 0.36 0.42 0.06 0 0 0 0 0
x1=-0.5 0.00 0.00 0.0 0.00 0.02 0.10 0.12 0.18 0.22 0.36 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -3.39642655 -1.24464060
2 I2 -1.24464060 -0.74467641
3 I3 -0.74467641 -0.49899976
4 I4 -0.49899976 -0.28770612
5 I5 -0.28770612 0.08823628
6 I6 0.08823628 0.32591857
7 I7 0.32591857 0.64058689
8 I8 0.64058689 0.89817976
9 I9 0.89817976 1.23254113
10 I10 1.23254113 1.56786209
11 I11 1.56786209 2.43249119
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0.22 0 0.23 0.05 0.17 0.11 0.11 0 0.11 2.220446e-16
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.185042259 -1.308338637
2 I2 -1.308338637 -0.824453050
3 I3 -0.824453050 -0.484044849
4 I4 -0.484044849 -0.280627490
5 I5 -0.280627490 -0.005094068
6 I6 -0.005094068 0.243510685
7 I7 0.243510685 0.377241637
8 I8 0.377241637 0.635257563
9 I9 0.635257563 0.973476219
10 I10 0.973476219 1.219192895
11 I11 1.219192895 2.319091861
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.33 0 0.17 0 0 0.06 0.11 0 0.09 0.13 0.11
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.2220 0.788
q(x2,x1) 0.2205 0.835
max.dependence 0.2220 0.936
a p.values
asymmetry 0.0015 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.09516258 -0.03862239
2 I2 -0.03862239 0.03458622
3 I3 0.03458622 0.06551644
4 I4 0.06551644 0.09456571
5 I5 0.09456571 0.12625584
6 I6 0.12625584 0.16706794
7 I7 0.16706794 0.22155232
8 I8 0.22155232 0.32045365
9 I9 0.32045365 0.40051564
10 I10 0.40051564 0.46416305
11 I11 0.46416305 0.54033176
12 I12 0.54033176 0.61428162
13 I13 0.61428162 0.71731366
14 I14 0.71731366 0.84347808
15 I15 0.84347808 1.09321362
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.48 0.28 0.12 0.06 0.06 0.00 0.00 0.00 0.00 0 0 0 0 0 0
x1=0.5 0.00 0.00 0.00 0.00 0.00 0.06 0.18 0.48 0.28 0 0 0 0 0 0
x1=-0.5 0.00 0.00 0.00 0.00 0.06 0.26 0.24 0.32 0.12 0 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.19137842 -1.12695052
2 I2 -1.12695052 -0.62811906
3 I3 -0.62811906 -0.41697202
4 I4 -0.41697202 -0.28350704
5 I5 -0.28350704 -0.12061352
6 I6 -0.12061352 0.02908693
7 I7 0.02908693 0.24857979
8 I8 0.24857979 0.56038981
9 I9 0.56038981 0.78624228
10 I10 0.78624228 1.35989715
11 I11 1.35989715 2.71247430
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.33 0 0.01909091 0.1009091 0.05 0.17 0.22 0 0.11 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.7568447 -1.2723853
2 I2 -1.2723853 -0.9452424
3 I3 -0.9452424 -0.7419253
4 I4 -0.7419253 -0.5514552
5 I5 -0.5514552 -0.2675429
6 I6 -0.2675429 -0.1138264
7 I7 -0.1138264 0.1686010
8 I8 0.1686010 0.4108334
9 I9 0.4108334 0.6942796
10 I10 0.6942796 1.0024789
11 I11 1.0024789 2.1197492
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.17 0.06 0.11 0.04 0.18 0 0 0.11 0.11 0.11 0.11
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.2565 0.496
q(x2,x1) 0.1710 0.988
max.dependence 0.2565 0.719
a p.values
asymmetry 0.0855 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.099231279 -0.038123532
2 I2 -0.038123532 -0.006487406
3 I3 -0.006487406 0.021932142
4 I4 0.021932142 0.049988095
5 I5 0.049988095 0.078320791
6 I6 0.078320791 0.101911102
7 I7 0.101911102 0.143111212
8 I8 0.143111212 0.216682742
9 I9 0.216682742 0.269014130
10 I10 0.269014130 0.340853423
11 I11 0.340853423 0.493514069
12 I12 0.493514069 0.591869259
13 I13 0.591869259 0.701079893
14 I14 0.701079893 0.862185677
15 I15 0.862185677 1.025787088
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.24 0.1 0.36 0.18 0 0.06 0.06 0.00 0.00 0.00 0.00 0.00 0 0 0
x1=0.5 0.00 0.0 0.00 0.00 0 0.00 0.00 0.12 0.24 0.24 0.34 0.06 0 0 0
x1=-0.5 0.00 0.0 0.00 0.00 0 0.06 0.00 0.18 0.34 0.40 0.02 0.00 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.08908187 -1.13306322
2 I2 -1.13306322 -0.92539949
3 I3 -0.92539949 -0.68116667
4 I4 -0.68116667 -0.37738928
5 I5 -0.37738928 -0.15728354
6 I6 -0.15728354 -0.04983687
7 I7 -0.04983687 0.12547840
8 I8 0.12547840 0.35387512
9 I9 0.35387512 0.62694095
10 I10 0.62694095 1.06676708
11 I11 1.06676708 2.68476925
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0.11 0.11 0.11 0.12 0.11 0 0 0 0.21 0.23
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.2657769 -1.2368465
2 I2 -1.2368465 -1.0440429
3 I3 -1.0440429 -0.6460527
4 I4 -0.6460527 -0.4359399
5 I5 -0.4359399 -0.1706246
6 I6 -0.1706246 0.1079978
7 I7 0.1079978 0.2464800
8 I8 0.2464800 0.5875414
9 I9 0.5875414 0.8966905
10 I10 0.8966905 1.5480425
11 I11 1.5480425 2.8007915
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.01 0.1 0 0 0 0.11 0.11 0.19 0.14 0.18 0.16
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.1965 0.921
q(x2,x1) 0.2205 0.812
max.dependence 0.2205 0.940
a p.values
asymmetry -0.024 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.09496185 -0.01806348
2 I2 -0.01806348 0.03204058
3 I3 0.03204058 0.06374143
4 I4 0.06374143 0.09173616
5 I5 0.09173616 0.12726967
6 I6 0.12726967 0.17702897
7 I7 0.17702897 0.23494959
8 I8 0.23494959 0.29676423
9 I9 0.29676423 0.34180038
10 I10 0.34180038 0.43803600
11 I11 0.43803600 0.53875527
12 I12 0.53875527 0.64303565
13 I13 0.64303565 0.76357389
14 I14 0.76357389 0.85532452
15 I15 0.85532452 1.07019855
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.34 0.3 0.12 0.06 0.18 0.00 0.00 0.00 0.0 0.00 0 0 0 0 0
x1=0.5 0.00 0.0 0.00 0.00 0.00 0.06 0.06 0.40 0.3 0.18 0 0 0 0 0
x1=-0.5 0.00 0.0 0.00 0.00 0.00 0.00 0.12 0.44 0.2 0.24 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.96503327 -1.07240925
2 I2 -1.07240925 -0.85110238
3 I3 -0.85110238 -0.64052596
4 I4 -0.64052596 -0.32915192
5 I5 -0.32915192 -0.06554498
6 I6 -0.06554498 0.27230617
7 I7 0.27230617 0.42955700
8 I8 0.42955700 0.59992192
9 I9 0.59992192 0.81337749
10 I10 0.81337749 1.17335200
11 I11 1.17335200 3.01560939
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0.07 0 0 0.16 2.220446e-16 0.18 0.15 0.11 0.22 0.11
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -1.9716103 -1.2346283
2 I2 -1.2346283 -0.8587160
3 I3 -0.8587160 -0.5880083
4 I4 -0.5880083 -0.4603294
5 I5 -0.4603294 -0.1243106
6 I6 -0.1243106 0.1059317
7 I7 0.1059317 0.3204438
8 I8 0.3204438 0.5385231
9 I9 0.5385231 0.7231481
10 I10 0.7231481 1.1091607
11 I11 1.1091607 2.6691823
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0 0.22 0.06 0.33 0.11 1.110223e-16 0.11 0 0 0 0.17
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.2955 0.194
q(x2,x1) 0.2400 0.652
max.dependence 0.2955 0.312
a p.values
asymmetry 0.0555 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [10s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.09075260 -0.02997201
2 I2 -0.02997201 0.02428626
3 I3 0.02428626 0.05545863
4 I4 0.05545863 0.09825755
5 I5 0.09825755 0.14414680
6 I6 0.14414680 0.18732851
7 I7 0.18732851 0.25452005
8 I8 0.25452005 0.31287039
9 I9 0.31287039 0.39888304
10 I10 0.39888304 0.48017297
11 I11 0.48017297 0.56231392
12 I12 0.56231392 0.63592623
13 I13 0.63592623 0.74608702
14 I14 0.74608702 0.82105748
15 I15 0.82105748 1.02178232
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.36 0.28 0.24 0.12 0.00 0.00 0.0 0.00 0.00 0 0 0 0 0 0
x1=0.5 0.00 0.00 0.00 0.00 0.06 0.36 0.3 0.14 0.14 0 0 0 0 0 0
x1=-0.5 0.00 0.00 0.00 0.00 0.00 0.06 0.3 0.24 0.40 0 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.3437834 -1.2423721
2 I2 -1.2423721 -1.0445725
3 I3 -1.0445725 -0.8609412
4 I4 -0.8609412 -0.4694128
5 I5 -0.4694128 -0.2727131
6 I6 -0.2727131 -0.1250161
7 I7 -0.1250161 0.1830120
8 I8 0.1830120 0.3872329
9 I9 0.3872329 0.8538618
10 I10 0.8538618 1.1682619
11 I11 1.1682619 1.8416357
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.16 0.07 0.03 0.19 0 0.22 0 0.11 0 0.11 0.11
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.26934563 -1.22484206
2 I2 -1.22484206 -0.95423162
3 I3 -0.95423162 -0.52915911
4 I4 -0.52915911 -0.35261930
5 I5 -0.35261930 -0.09837744
6 I6 -0.09837744 0.18034143
7 I7 0.18034143 0.41133576
8 I8 0.41133576 0.58969707
9 I9 0.58969707 0.83046382
10 I10 0.83046382 1.23046359
11 I11 1.23046359 2.28461422
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.11 0 0.06 0 0.11 0.11 0 0.11 0.11 0.16 0.23
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.2950 0.202
q(x2,x1) 0.2995 0.176
max.dependence 0.2995 0.300
a p.values
asymmetry -0.0045 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.5
Check: tests
Result: ERROR
Running 'testthat.R' [13s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(qad)
>
> test_check("qad")
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 1 4
2 I2 4 16
3 I3 16 36
4 I4 36 64
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4
x1=1 1 0 0 0
x1=3 0 1 0 0
x1=5 0 0 1 0
x1=7 0 0 0 1
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -0.098664399 -0.036994966
2 I2 -0.036994966 0.005668544
3 I3 0.005668544 0.052680424
4 I4 0.052680424 0.091953660
5 I5 0.091953660 0.141604451
6 I6 0.141604451 0.195627694
7 I7 0.195627694 0.235298965
8 I8 0.235298965 0.283515119
9 I9 0.283515119 0.363585234
10 I10 0.363585234 0.476656975
11 I11 0.476656975 0.540226418
12 I12 0.540226418 0.681384355
13 I13 0.681384355 0.769581441
14 I14 0.769581441 0.872696259
15 I15 0.872696259 0.989814914
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11 I12 I13 I14 I15
x1=0 0.54 0.14 0.18 0.08 0.06 0.00 0.00 0.00 0.00 0.00 0 0 0 0 0
x1=0.5 0.00 0.00 0.00 0.00 0.06 0.24 0.22 0.24 0.06 0.18 0 0 0 0 0
x1=-0.5 0.00 0.00 0.00 0.00 0.00 0.06 0.06 0.28 0.42 0.18 0 0 0 0 0
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -2.24592579 -1.45662771
2 I2 -1.45662771 -1.07566579
3 I3 -1.07566579 -0.79511495
4 I4 -0.79511495 -0.60124283
5 I5 -0.60124283 -0.42697692
6 I6 -0.42697692 -0.15549778
7 I7 -0.15549778 0.05663157
8 I8 0.05663157 0.43730300
9 I9 0.43730300 0.72786699
10 I10 0.72786699 1.50032785
11 I11 1.50032785 2.91590568
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.23 0.16 0.11 0.11 0 0.11 0.11 0 0.11 0.06 1.110223e-16
Intervalls for the variable x2
Interval lowerBound upperBound
1 I1 -3.4872969 -1.2575585
2 I2 -1.2575585 -0.9294582
3 I3 -0.9294582 -0.5954415
4 I4 -0.5954415 -0.3522134
5 I5 -0.3522134 -0.1135095
6 I6 -0.1135095 0.1811014
7 I7 0.1811014 0.3307064
8 I8 0.3307064 0.5750210
9 I9 0.5750210 1.1307208
10 I10 1.1307208 1.4322579
11 I11 1.4322579 3.0549640
Probability that X2 given X1=x1 lies in the interval I_i :
I1 I2 I3 I4 I5 I6 I7 I8 I9 I10 I11
x1=0 0.22 0 0.22 0.11 0 0.22 0.12 0 0.11 0 0
[1] "computation process..."
[1] "computation process: 2 / 3"
[1] "computation process: 3 / 3"
p.values are adjusted by using the method fdr
quantification of asymmetric dependencies:
Sample Size: 100
Number of unique ranks: x1: 100
x2: 100
(x1,x2): 100
Resolution: 10 x 10
Dependence measures:
q p.values
q(x1,x2) 0.307 0.135
q(x2,x1) 0.246 0.575
max.dependence 0.307 0.220
a p.values
asymmetry 0.061 NA
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-predict.R:42:3'): plot is returned by prediction ─────────────
class(pred[[2]]) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:79:3'): heatmap.qad ────────────────────────────────────
class(qad::heatmap.qad(pw_fit, select = "dependence")) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-qad.R:80:3'): heatmap.qad ────────────────────────────────────
class(...) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:24:3'): plot.qad ──────────────────────────
class(plot(fit)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:25:3'): plot.qad ──────────────────────────
class(plot(fit, addSample = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:26:3'): plot.qad ──────────────────────────
class(plot(fit, copula = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:27:3'): plot.qad ──────────────────────────
class(plot(fit, density = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:28:3'): plot.qad ──────────────────────────
class(plot(fit, margins = TRUE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:29:3'): plot.qad ──────────────────────────
class(plot(fit, panel.grid = FALSE)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
── Failure ('test-utilityfunctions.R:33:3'): plot_density ──────────────────────
class(plot_density(fit$mass_matrix)) (`actual`) not equal to c("gg", "ggplot") (`expected`).
`actual`: "ggplot2::ggplot" "ggplot" "ggplot2::gg" "S7_object" "gg"
`expected[2:2]`: "ggplot"
[ FAIL 10 | WARN 26 | SKIP 0 | PASS 71 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64