Version: | 2.3.0 |
Type: | Package |
Title: | Download Content from NCBI Databases |
Date: | 2021-07-02 |
Depends: | R (≥ 3.6.0), methods |
Imports: | httr, xml2 |
Description: | A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed. |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
LazyData: | true |
NeedsCompilation: | no |
Packaged: | 2021-07-05 06:21:51 UTC; skovalchik |
Author: | Stephanie Kovalchik [aut, cre] |
Maintainer: | Stephanie Kovalchik <s.a.kovalchik@gmail.com> |
RoxygenNote: | 7.1.1 |
Repository: | CRAN |
Date/Publication: | 2021-07-05 07:10:06 UTC |
Download content from NCBI databases.
Description
Download content from NCBI databases. This package is intended to facilitate analyses of NCBI database content. This package is not intended for reference management.
Details
Package: | RISmed |
Type: | Package |
Version: | 2.1.3 |
Date: | 2014-7-20 |
License: | GPL (>=2) |
LazyLoad: | yes |
Note on usage:
In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.
Author(s)
Maintainer: Stephanie Kovalchik <s.a.kovalchik@gmail.com>
Extracts AbstractText
from Medline
object.
Description
Extractor for the AbstractText
of a Medline
object.
Usage
AbstractText(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
AbstractText(myeloma)
~~ Methods for Function AbstractText
in Package RISmed ~~
Description
~~ Methods for function AbstractText
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Affiliation
from Medline
object.
Description
Extractor for the Affiliation
of a Medline
object.
Usage
Affiliation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Affiliation(myeloma)
~~ Methods for Function Affiliation
in Package RISmed ~~
Description
~~ Methods for function Affiliation
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ArticleId
from Medline
object.
Description
Extractor for the ArticleId
of a Medline
object.
Usage
ArticleId(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ArticleId(myeloma)
~~ Methods for Function ArticleId
in Package RISmed ~~
Description
~~ Methods for function ArticleId
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ArticleTitle
from Medline
object.
Description
Extractor for the ArticleTitle
of a Medline
object.
Usage
ArticleTitle(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ArticleTitle(myeloma)
~~ Methods for Function ArticleTitle
in Package RISmed ~~
Description
~~ Methods for function ArticleTitle
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Author
from Medline
object.
Description
Extractor for the Author
of a Medline
object.
Usage
Author(object)
Arguments
object |
instance of class |
Value
List by Pubmed article. Each list contains a data frame with CollectiveName
, LastName
, ForeName
, Initials
, and order
of article authors.
See Also
Examples
data(myeloma)
Author(myeloma)
~~ Methods for Function Author
in Package RISmed ~~
Description
~~ Methods for function Author
in package RISmed ~~
Methods
signature(object = "Medline")
-
List by Pubmed article. Each list contains a data frame with
LastName
,ForeName
,Initials
, andorder
of article authors.
Extracts COIStatement
from Medline
object.
Description
Extractor for the COIStatement
of a Medline
object.
Usage
COIStatement(object)
Arguments
object |
instance of class |
Value
vector
See Also
~~ Methods for Function COIStatement
in Package RISmed ~~
Description
~~ Methods for function COIStatement
in package RISmed ~~
Methods
signature(object = "Medline")
List of citing article titles where listed in PubMed.
Description
Retrieves the number of citations in PubMed Central for the articles contained in the Medline
object.
Usage
Citations(object)
Arguments
object |
instance of class |
Value
vector
See Also
~~ Methods for Function Citations
in Package RISmed ~~
Description
~~ Methods for function Citations
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts CopyrightInformation
from Medline
object.
Description
Extractor for the CopyrightInformation
of a Medline
object.
Usage
CopyrightInformation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
CopyrightInformation(myeloma)
~~ Methods for Function CopyrightInformation
in Package RISmed ~~
Description
~~ Methods for function CopyrightInformation
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Country
from Medline
object.
Description
Extractor for the Country
of a Medline
object.
Usage
Country(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Country(myeloma)
~~ Methods for Function Country
in Package RISmed ~~
Description
~~ Methods for function Country
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DOI
from Medline
object.
Description
Extractor for the DOI
of a Medline
object.
Usage
DOI(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DOI(myeloma)
~~ Methods for Function DOI
in Package RISmed ~~
Description
~~ Methods for function DOI
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayAccepted
from Medline
object.
Description
Extractor for the DayAccepted
of a Medline
object. This date corresponds to the date the article was accepted.
Usage
DayAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayAccepted(myeloma)
~~ Methods for Function DayAccepted
in Package RISmed ~~
Description
~~ Methods for function DayAccepted
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayArticleDate
from Medline
object.
Description
Extractor for the DayArticleDate
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
DayArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayArticleDate(myeloma)
~~ Methods for Function DayArticleDate
in Package RISmed ~~
Description
~~ Methods for function DayArticleDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayEntrez
from Medline
object.
Description
Extractor for the DayEntrez
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
DayEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayEntrez(myeloma)
~~ Methods for Function DayEntrez
in Package RISmed ~~
Description
~~ Methods for function DayEntrez
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayEpublish
from Medline
object.
Description
Extractor for the DayEpublish
of a Medline
object. This date corresponds to the date the article was published online.
Usage
DayEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayEpublish(myeloma)
~~ Methods for Function DayEpublish
in Package RISmed ~~
Description
~~ Methods for function DayEpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayMedline
from Medline
object.
Description
Extractor for the DayMedline
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
DayMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayMedline(myeloma)
~~ Methods for Function DayMedline
in Package RISmed ~~
Description
~~ Methods for function DayMedline
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPmc
from Medline
object.
Description
Extractor for the DayPmc
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
DayPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPmc(myeloma)
~~ Methods for Function DayPmc
in Package RISmed ~~
Description
~~ Methods for function DayPmc
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPpublish
from Medline
object.
Description
Extractor for the DayPpublish
of a Medline
object. This date corresponds to the date the article was published in print.
Usage
DayPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPpublish(myeloma)
~~ Methods for Function DayPpublish
in Package RISmed ~~
Description
~~ Methods for function DayPpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPubDate
from Medline
object.
Description
Extractor for the DayPubDate
of a Medline
object. This date corresponds to the date the article was PubDate.
Usage
DayPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPubDate(myeloma)
~~ Methods for Function DayPubDate
in Package RISmed ~~
Description
~~ Methods for function DayPubDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPubmed
from Medline
object.
Description
Extractor for the DayPubmed
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
DayPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPubmed(myeloma)
~~ Methods for Function DayPubmed
in Package RISmed ~~
Description
~~ Methods for function DayPubmed
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayReceived
from Medline
object.
Description
Extractor for the DayReceived
of a Medline
object. This date corresponds to the date the article was received.
Usage
DayReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayReceived(myeloma)
~~ Methods for Function DayReceived
in Package RISmed ~~
Description
~~ Methods for function DayReceived
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayRevised
from Medline
object.
Description
Extractor for the DayRevised
of a Medline
object. This date corresponds to the date the article was Revised.
Usage
DayRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayRevised(myeloma)
~~ Methods for Function DayRevised
in Package RISmed ~~
Description
~~ Methods for function DayRevised
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ELocationID
from Medline
object.
Description
Extractor for the ELocationID
of a Medline
object.
Usage
ELocationID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ELocationID(myeloma)
~~ Methods for Function ELocationID
in Package RISmed ~~
Description
~~ Methods for function ELocationID
in package RISmed ~~
Methods
signature(object = "Medline")
Results of an NCBI EUtils query
Description
Download results of a query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsGet(x,type="efetch",db="pubmed")
Arguments
x |
Either vector of NCBI records ids, i.e. returned ids from |
type |
string indicating type of NCBI Eutility, |
db |
string indicating the NCBI database used in query |
Details
Possible E-utilities to supply to type
are efetch
, esummary
, and elink
.
The database name supplied to db
can be any valid Entrez database, such as pubmed
, protein
, nlm
, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Note on usage:
In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.
Value
For queries to PubMed, a list by article, with named vectors for each field of the article result.
For all other database, a list of the XML
tree strucure used where XML output is available in E-Utils.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Summary help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
See Also
Construct URL to make NCBI EUtils query
Description
Construct a URL query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsQuery(query,type="esearch",db="pubmed",...)
Arguments
query |
string query as given in NCBI search box |
type |
string indicating type of NCBI Eutility |
db |
string indicating the NCBI database used in query |
... |
additional limits added to query |
Details
Possible E-utilities to supply to type
are einfo
, esearch
, epost
, esummary
, elink
, egquery
, espell
.
The database name supplied to db
can be any valid Entrez database, such as pubmed
, protein
, nlm
, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Limits that can be supplied to ...
to refine the query
include:
reldate | Limits search results to be within the specified number of days from current date. |
mindate | Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate . |
maxdate | Maximum of date range for search results; must be supplied with mindate . |
datetype | Which date field to use in setting date limits. Possible choices are edat , Entrez date, which is the date article was added to Entez, or ppdt , the article publication date. Default is edat . |
retstart | Where in the sequence of returned results to begin retrieving, default is 0. |
retmax | Maximum number of records to retrieve, default is 1000. |
Value
String URL to access NCBI E-utility.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Query help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
Examples
# PUBMED QUERY
EUtilsQuery("myeloma[ti] jones[au]")
# RESTRICT TO RECORDS WITHIN LAST 30 days
EUtilsQuery("myeloma[ti] jones[au]",reldat=30)
Get summary of NCBI EUtils query
Description
Get summary information on the results of a query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsSummary(query,type="esearch",db="pubmed",url=NULL,encoding="unknown",...)
Arguments
query |
string query as given in NCBI search box |
type |
string indicating type of NCBI Eutility |
db |
string indicating the NCBI database used in query |
url |
string of url to bypass query construction |
encoding |
encoding to be assumed for input strings, see |
... |
additional limits added to query |
Details
Possible E-utilities to supply to type
are einfo
, esearch
, epost
, esummary
, elink
, egquery
, espell
.
The database name supplied to db
can be any valid Entrez database, such as pubmed
, protein
, nlm
, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Limits that can be supplied to ...
to refine the query
include:
reldate | Limits search results to be within the specified number of days from current date. |
mindate | Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate . |
maxdate | Maximum of date range for search results; must be supplied with mindate . |
datetype | Which date field to use in setting date limits. Possible choices are edat , Entrez date, which is the date article was added to Entez, or ppdt , the article publication date. Default is edat . |
retstart | Where in the sequence of returned results to begin retrieving, default is 0. |
retmax | Maximum number of records to retrieve, default is 1000. |
Value
Returns an EUtilsSummary
object.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Summary help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
See Also
Class "EUtilsSummary"
Description
Summary of query of an NCBI E-utility
Objects from the Class
Objects can be created by calls of the form new("EUtilsSummary", ...)
.
Slots
db
:Name of database
count
:total ids
retmax
:limit on number of records to return
retstart
:numeric indicating where return records start
PMID
:character vector of matching ids
querytranslation
:character of NCBI translation of query
Methods
- QueryCount
signature(object = "EUtilsSummary")
: ...- QueryId
signature(object = "EUtilsSummary")
: ...signature(x = "EUtilsSummary")
: ...- show
signature(object = "EUtilsSummary")
: ...- summary
signature(object = "EUtilsSummary")
: ...- QueryTranslation
signature(object = "EUtilsSummary")
: ...
Author(s)
Stephanie Kovalchik
Extracts list of GrantID
info Medline
object including GrantID
and GrantAgency
where listed in PubMed.
Description
Extractor for the GrantID
of a Medline
object.
Usage
GrantID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
GrantID(myeloma)
~~ Methods for Function GrantID
in Package RISmed ~~
Description
~~ Methods for function GrantID
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourAccepted
from Medline
object.
Description
Extractor for the HourAccepted
of a Medline
object. This date corresponds to the date the article was accepted.
Usage
HourAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourAccepted(myeloma)
~~ Methods for Function HourAccepted
in Package RISmed ~~
Description
~~ Methods for function HourAccepted
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourEntrez
from Medline
object.
Description
Extractor for the HourEntrez
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
HourEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourEntrez(myeloma)
~~ Methods for Function HourEntrez
in Package RISmed ~~
Description
~~ Methods for function HourEntrez
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourEpublish
from Medline
object.
Description
Extractor for the HourEpublish
of a Medline
object. This date corresponds to the date the article was published online.
Usage
HourEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourEpublish(myeloma)
~~ Methods for Function HourEpublish
in Package RISmed ~~
Description
~~ Methods for function HourEpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourMedline
from Medline
object.
Description
Extractor for the HourMedline
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
HourMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourMedline(myeloma)
~~ Methods for Function HourMedline
in Package RISmed ~~
Description
~~ Methods for function HourMedline
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPmc
from Medline
object.
Description
Extractor for the HourPmc
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
HourPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPmc(myeloma)
~~ Methods for Function HourPmc
in Package RISmed ~~
Description
~~ Methods for function HourPmc
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPpublish
from Medline
object.
Description
Extractor for the HourPpublish
of a Medline
object. This date corresponds to the date the article was published in print.
Usage
HourPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPpublish(myeloma)
~~ Methods for Function HourPpublish
in Package RISmed ~~
Description
~~ Methods for function HourPpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPubmed
from Medline
object.
Description
Extractor for the HourPubmed
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
HourPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPubmed(myeloma)
~~ Methods for Function HourPubmed
in Package RISmed ~~
Description
~~ Methods for function HourPubmed
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourReceived
from Medline
object.
Description
Extractor for the HourReceived
of a Medline
object. This date corresponds to the date the article was received.
Usage
HourReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourReceived(myeloma)
~~ Methods for Function HourReceived
in Package RISmed ~~
Description
~~ Methods for function HourReceived
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISOAbbreviation
from Medline
object.
Description
Extractor for the ISOAbbreviation
of a Medline
object.
Usage
ISOAbbreviation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISOAbbreviation(myeloma)
~~ Methods for Function ISOAbbreviation
in Package RISmed ~~
Description
~~ Methods for function ISOAbbreviation
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISSN
from Medline
object.
Description
Extractor for the ISSN
of a Medline
object.
Usage
ISSN(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISSN(myeloma)
~~ Methods for Function ISSN
in Package RISmed ~~
Description
~~ Methods for function ISSN
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISSNLinking
from Medline
object.
Description
Extractor for the ISSNLinking
of a Medline
object.
Usage
ISSNLinking(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISSNLinking(myeloma)
~~ Methods for Function ISSNLinking
in Package RISmed ~~
Description
~~ Methods for function ISSNLinking
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Issue
from Medline
object.
Description
Extractor for the Issue
of a Medline
object.
Usage
Issue(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Issue(myeloma)
~~ Methods for Function Issue
in Package RISmed ~~
Description
~~ Methods for function Issue
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts list of Keywords
info from Medline
object.
Description
Extractor for the Keywords
of a Medline
object.
Usage
Keywords(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Keywords(myeloma)
~~ Methods for Function Keywords
in Package RISmed ~~
Description
~~ Methods for function Keywords
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Language
from Medline
object.
Description
Extractor for the Language
of a Medline
object.
Usage
Language(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Language(myeloma)
~~ Methods for Function Language
in Package RISmed ~~
Description
~~ Methods for function Language
in package RISmed ~~
Methods
signature(object = "Medline")
Class "Medline"
Description
Class for Medline citation of query to PubMed.
Objects from the Class
Objects can be created by calls of the form new("Medline", ...)
.
Slots
Unless stated otherwise, each of the components is a vector of the given field where each element corresponds to a PubMed article.
Query
:PMID
:YearPubDate
:MonthPubDate
:DayPubDate
:YearRevised
:MonthRevised
:DayRevised
:YearEntrez
:MonthEntrez
:DayEntrez
:HourEntrez
:MinuteEntrez
:YearArticleDate
:MonthArticleDate
:DayArticleDate
:YearMedline
:MonthMedline
:DayMedline
:HourMedline
:MinuteMedline
:YearAccepted
:MonthAccepted
:DayAccepted
:HourAccepted
:MinuteAccepted
:YearReceived
:MonthReceived
:DayReceived
:HourReceived
:MinuteReceived
:YearEpublish
:MonthEpublish
:DayEpublish
:HourEpublish
:MinuteEpublish
:YearPpublish
:MonthPpublish
:DayPpublish
:HourPpublish
:MinutePpublish
:YearPmc
:MonthPmc
:DayPmc
:HourPmc
:MinutePmc
:YearPubmed
:MonthPubmed
:DayPubmed
:HourPubmed
:MinutePubmed
:Author
:list of data frames giving
LastName
,ForeName
,Initials
, andorder
of authors by PubMed article.ISSN
:Title
:ArticleTitle
:ELocationID
:AbstractText
:Affiliation
:Language
:PublicationType
:MedlineTA
:NlmUniqueID
:ISSNLinking
:PublicationStatus
:ArticleId
:DOI
:Volume
:Issue
:ISOAbbreviation
:MedlinePgn
:CopyrightInformation
:Country
:GrantID
:COIStatement
:Mesh
:list of data frames giving
Heading
andType
of MeSH term orNA
if no terms are in MEDLINE recordKeywords
:Citations
:
Methods
In addition to print
and show
methods, each slot of the Medline
class has a corresponding extractor of the same name.
signature(x = "Medline", ...)
: ...- show
signature(object = "Medline")
: ...- c
signature(x = "Medline", ...)
: ...- Query
signature(object = "Medline")
: ...- PMID
signature(object = "Medline")
: ...- YearPubDate
signature(object = "Medline")
: ...- MonthPubDate
signature(object = "Medline")
: ...- DayPubDate
signature(object = "Medline")
: ...- YearRevised
signature(object = "Medline")
: ...- MonthRevised
signature(object = "Medline")
: ...- DayRevised
signature(object = "Medline")
: ...- YearEntrez
signature(object = "Medline")
: ...- MonthEntrez
signature(object = "Medline")
: ...- DayEntrez
signature(object = "Medline")
: ...- HourEntrez
signature(object = "Medline")
: ...- MinuteEntrez
signature(object = "Medline")
: ...- YearArticleDate
signature(object = "Medline")
: ...- MonthArticleDate
signature(object = "Medline")
: ...- DayArticleDate
signature(object = "Medline")
: ...- YearMedline
signature(object = "Medline")
: ...- MonthMedline
signature(object = "Medline")
: ...- DayMedline
signature(object = "Medline")
: ...- HourMedline
signature(object = "Medline")
: ...- MinuteMedline
signature(object = "Medline")
: ...- YearAccepted
signature(object = "Medline")
: ...- MonthAccepted
signature(object = "Medline")
: ...- DayAccepted
signature(object = "Medline")
: ...- HourAccepted
signature(object = "Medline")
: ...- MinuteAccepted
signature(object = "Medline")
: ...- YearReceived
signature(object = "Medline")
: ...- MonthReceived
signature(object = "Medline")
: ...- DayReceived
signature(object = "Medline")
: ...- HourReceived
signature(object = "Medline")
: ...- MinuteReceived
signature(object = "Medline")
: ...- YearEpublish
signature(object = "Medline")
: ...- MonthEpublish
signature(object = "Medline")
: ...- DayEpublish
signature(object = "Medline")
: ...- HourEpublish
signature(object = "Medline")
: ...- MinuteEpublish
signature(object = "Medline")
: ...- YearPpublish
signature(object = "Medline")
: ...- MonthPpublish
signature(object = "Medline")
: ...- DayPpublish
signature(object = "Medline")
: ...- HourPpublish
signature(object = "Medline")
: ...- MinutePpublish
signature(object = "Medline")
: ...- YearPmc
signature(object = "Medline")
: ...- MonthPmc
signature(object = "Medline")
: ...- DayPmc
signature(object = "Medline")
: ...- HourPmc
signature(object = "Medline")
: ...- MinutePmc
signature(object = "Medline")
: ...- YearPubmed
signature(object = "Medline")
: ...- MonthPubmed
signature(object = "Medline")
: ...- DayPubmed
signature(object = "Medline")
: ...- HourPubmed
signature(object = "Medline")
: ...- MinutePubmed
signature(object = "Medline")
: ...- Author
signature(object = "Medline")
: ...- ISSN
signature(object = "Medline")
: ...- Title
signature(object = "Medline")
: ...- ArticleTitle
signature(object = "Medline")
: ...- ELocationID
signature(object = "Medline")
: ...- AbstractText
signature(object = "Medline")
: ...- Affiliation
signature(object = "Medline")
: ...- Language
signature(object = "Medline")
: ...- PublicationType
signature(object = "Medline")
: ...- MedlineTA
signature(object = "Medline")
: ...- NlmUniqueID
signature(object = "Medline")
: ...- ISSNLinking
signature(object = "Medline")
: ...- PublicationStatus
signature(object = "Medline")
: ...- ArticleId
signature(object = "Medline")
: ...- DOI
signature(object = "Medline")
: ...- Volume
signature(object = "Medline")
: ...- Issue
signature(object = "Medline")
: ...- ISOAbbreviation
signature(object = "Medline")
: ...- MedlinePgn
signature(object = "Medline")
: ...- CopyrightInformation
signature(object = "Medline")
: ...- Country
signature(object = "Medline")
: ...- GrantID
signature(object = "Medline")
: ...- COIStatement
signature(object = "Medline")
: ...- Mesh
signature(object = "Medline")
: ...- Keywords
signature(object = "Medline")
: ...- Affiliations
signature(object = "Medline")
: ...
Author(s)
Stephanie Kovalchik
Extracts MedlinePgn
from Medline
object.
Description
Extractor for the MedlinePgn
of a Medline
object.
Usage
MedlinePgn(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
MedlinePgn(myeloma)
~~ Methods for Function MedlinePgn
in Package RISmed ~~
Description
~~ Methods for function MedlinePgn
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MedlineTA
from Medline
object.
Description
Extractor for the MedlineTA
of a Medline
object.
Usage
MedlineTA(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
MedlineTA(myeloma)
~~ Methods for Function MedlineTA
in Package RISmed ~~
Description
~~ Methods for function MedlineTA
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Mesh
headings from Medline
object.
Description
Extractor for the Mesh
headings of a Medline
object.
Usage
Mesh(object)
Arguments
object |
instance of class |
Details
In Process and publisher-supplied records lack MeSH terms. See the MeSH home page https://www.nlm.nih.gov/mesh/meshhome.html for additional information about MeSH. Note that more recent records may lack MeSH headings.
Value
List by Pubmed article. Each list contains a data frame with Heading
and Type
. The Heading
is a MeSH Term and Type
is either a Descriptor
or a Qualifier
of a Descriptor term. Qualifiers of a Descriptor immediately follow the Descriptor term in the data frame. When MeSH headings have not been included with a MEDLINE record, the list will contain NAs
(see details).
See Also
~~ Methods for Function Mesh
in Package RISmed ~~
Description
~~ Methods for function Mesh
in package RISmed ~~
Methods
signature(object = "Medline")
-
List by Pubmed article. Each list contains a data frame with
Heading
andType
. TheHeading
is a MeSH Term andType
is either aDescriptor
or aQualifier
of a Descriptor term.
Extracts MinuteAccepted
from Medline
object.
Description
Extractor for the MinuteAccepted
of a Medline
object. This date corresponds to the date the article was accepted.
Usage
MinuteAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteAccepted(myeloma)
~~ Methods for Function MinuteAccepted
in Package RISmed ~~
Description
~~ Methods for function MinuteAccepted
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteEntrez
from Medline
object.
Description
Extractor for the MinuteEntrez
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
MinuteEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteEntrez(myeloma)
~~ Methods for Function MinuteEntrez
in Package RISmed ~~
Description
~~ Methods for function MinuteEntrez
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteEpublish
from Medline
object.
Description
Extractor for the MinuteEpublish
of a Medline
object. This date corresponds to the date the article was published online.
Usage
MinuteEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteEpublish(myeloma)
~~ Methods for Function MinuteEpublish
in Package RISmed ~~
Description
~~ Methods for function MinuteEpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteMedline
from Medline
object.
Description
Extractor for the MinuteMedline
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
MinuteMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteMedline(myeloma)
~~ Methods for Function MinuteMedline
in Package RISmed ~~
Description
~~ Methods for function MinuteMedline
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePmc
from Medline
object.
Description
Extractor for the MinutePmc
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MinutePmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePmc(myeloma)
~~ Methods for Function MinutePmc
in Package RISmed ~~
Description
~~ Methods for function MinutePmc
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePpublish
from Medline
object.
Description
Extractor for the MinutePpublish
of a Medline
object. This date corresponds to the date the article was published in print.
Usage
MinutePpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePpublish(myeloma)
~~ Methods for Function MinutePpublish
in Package RISmed ~~
Description
~~ Methods for function MinutePpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePubmed
from Medline
object.
Description
Extractor for the MinutePubmed
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MinutePubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePubmed(myeloma)
~~ Methods for Function MinutePubmed
in Package RISmed ~~
Description
~~ Methods for function MinutePubmed
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteReceived
from Medline
object.
Description
Extractor for the MinuteReceived
of a Medline
object. This date corresponds to the date the article was received.
Usage
MinuteReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteReceived(myeloma)
~~ Methods for Function MinuteReceived
in Package RISmed ~~
Description
~~ Methods for function MinuteReceived
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthAccepted
from Medline
object.
Description
Extractor for the MonthAccepted
of a Medline
object. This date corresponds to the date the article was accepted.
Usage
MonthAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthAccepted(myeloma)
~~ Methods for Function MonthAccepted
in Package RISmed ~~
Description
~~ Methods for function MonthAccepted
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthArticleDate
from Medline
object.
Description
Extractor for the MonthArticleDate
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
MonthArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthArticleDate(myeloma)
~~ Methods for Function MonthArticleDate
in Package RISmed ~~
Description
~~ Methods for function MonthArticleDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthEntrez
from Medline
object.
Description
Extractor for the MonthEntrez
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
MonthEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthEntrez(myeloma)
~~ Methods for Function MonthEntrez
in Package RISmed ~~
Description
~~ Methods for function MonthEntrez
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthEpublish
from Medline
object.
Description
Extractor for the MonthEpublish
of a Medline
object. This date corresponds to the date the article was published online.
Usage
MonthEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthEpublish(myeloma)
~~ Methods for Function MonthEpublish
in Package RISmed ~~
Description
~~ Methods for function MonthEpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthMedline
from Medline
object.
Description
Extractor for the MonthMedline
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
MonthMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthMedline(myeloma)
~~ Methods for Function MonthMedline
in Package RISmed ~~
Description
~~ Methods for function MonthMedline
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPmc
from Medline
object.
Description
Extractor for the MonthPmc
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MonthPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPmc(myeloma)
~~ Methods for Function MonthPmc
in Package RISmed ~~
Description
~~ Methods for function MonthPmc
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPpublish
from Medline
object.
Description
Extractor for the MonthPpublish
of a Medline
object. This date corresponds to the date the article was published in print.
Usage
MonthPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPpublish(myeloma)
~~ Methods for Function MonthPpublish
in Package RISmed ~~
Description
~~ Methods for function MonthPpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPubDate
from Medline
object.
Description
Extractor for the MonthPubDate
of a Medline
object. This date corresponds to the date the article was PubDate.
Usage
MonthPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPubDate(myeloma)
~~ Methods for Function MonthPubDate
in Package RISmed ~~
Description
~~ Methods for function MonthPubDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPubmed
from Medline
object.
Description
Extractor for the MonthPubmed
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MonthPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPubmed(myeloma)
~~ Methods for Function MonthPubmed
in Package RISmed ~~
Description
~~ Methods for function MonthPubmed
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthReceived
from Medline
object.
Description
Extractor for the MonthReceived
of a Medline
object. This date corresponds to the date the article was received.
Usage
MonthReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthReceived(myeloma)
~~ Methods for Function MonthReceived
in Package RISmed ~~
Description
~~ Methods for function MonthReceived
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthRevised
from Medline
object.
Description
Extractor for the MonthRevised
of a Medline
object. This date corresponds to the date the article was Revised.
Usage
MonthRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthRevised(myeloma)
~~ Methods for Function MonthRevised
in Package RISmed ~~
Description
~~ Methods for function MonthRevised
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts NlmUniqueID
from Medline
object.
Description
Extractor for the NlmUniqueID
of a Medline
object.
Usage
NlmUniqueID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
NlmUniqueID(myeloma)
~~ Methods for Function NlmUniqueID
in Package RISmed ~~
Description
~~ Methods for function NlmUniqueID
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PMID
from Medline
object.
Description
Extractor for the PMID
of a Medline
object.
Usage
PMID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
PMID(myeloma)
~~ Methods for Function PMID
in Package RISmed ~~
Description
~~ Methods for function PMID
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PublicationStatus
from Medline
object.
Description
Extractor for the PublicationStatus
of a Medline
object.
Usage
PublicationStatus(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
PublicationStatus(myeloma)
~~ Methods for Function PublicationStatus
in Package RISmed ~~
Description
~~ Methods for function PublicationStatus
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PublicationType
from Medline
object.
Description
Extractor for the PublicationType
of a Medline
object.
Usage
PublicationType(object)
Arguments
object |
instance of class |
Value
list
See Also
Examples
data(myeloma)
PublicationType(myeloma)
~~ Methods for Function PublicationType
in Package RISmed ~~
Description
~~ Methods for function PublicationType
in package RISmed ~~
Methods
signature(object = "Medline")
Extract Query
from Medline
object.
Description
Extractor for the translated Query
of a Medline
object.
Usage
Query(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Query(myeloma)
~~ Methods for Function Query
in Package RISmed ~~
Description
~~ Methods for function Query
in package RISmed ~~
Methods
signature(object = "Medline")
Count of record results for EUtilsQuery
Description
Returns the number of Ids from a E-utility query
Usage
QueryCount(object)
Arguments
object |
object of the |
Value
numeric count
Author(s)
Stephanie Kovalchik
See Also
Get ids from EUtilsQuery
Description
Returns the vector Ids from a E-utility query
Usage
QueryId(object)
Arguments
object |
object of the |
Value
character vector of ids
Author(s)
Stephanie Kovalchik
See Also
Get the NCBI query translation from EUtilsQuery
Description
Returns the string translation of a E-utility query
Usage
QueryTranslation(object)
Arguments
object |
object of the |
Value
character query translation
Author(s)
Stephanie Kovalchik
See Also
Extracts Title
from Medline
object.
Description
Extractor for the Title
of a Medline
object.
Usage
Title(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Title(myeloma)
~~ Methods for Function Title
in Package RISmed ~~
Description
~~ Methods for function Title
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Volume
from Medline
object.
Description
Extractor for the Volume
of a Medline
object.
Usage
Volume(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Volume(myeloma)
~~ Methods for Function Volume
in Package RISmed ~~
Description
~~ Methods for function Volume
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearAccepted
from Medline
object.
Description
Extractor for the YearAccepted
of a Medline
object. This date corresponds to the date the article was accepted.
Usage
YearAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearAccepted(myeloma)
~~ Methods for Function YearAccepted
in Package RISmed ~~
Description
~~ Methods for function YearAccepted
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearArticleDate
from Medline
object.
Description
Extractor for the YearArticleDate
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
YearArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearArticleDate(myeloma)
~~ Methods for Function YearArticleDate
in Package RISmed ~~
Description
~~ Methods for function YearArticleDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearEntrez
from Medline
object.
Description
Extractor for the YearEntrez
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
YearEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearEntrez(myeloma)
~~ Methods for Function YearEntrez
in Package RISmed ~~
Description
~~ Methods for function YearEntrez
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearEpublish
from Medline
object.
Description
Extractor for the YearEpublish
of a Medline
object. This date corresponds to the date the article was published online.
Usage
YearEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearEpublish(myeloma)
~~ Methods for Function YearEpublish
in Package RISmed ~~
Description
~~ Methods for function YearEpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearMedline
from Medline
object.
Description
Extractor for the YearMedline
of a Medline
object. This date corresponds to the date the article was ArticleDate.
Usage
YearMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearMedline(myeloma)
~~ Methods for Function YearMedline
in Package RISmed ~~
Description
~~ Methods for function YearMedline
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPmc
from Medline
object.
Description
Extractor for the YearPmc
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
YearPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPmc(myeloma)
~~ Methods for Function YearPmc
in Package RISmed ~~
Description
~~ Methods for function YearPmc
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPpublish
from Medline
object.
Description
Extractor for the YearPpublish
of a Medline
object. This date corresponds to the date the article was published in print.
Usage
YearPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPpublish(myeloma)
~~ Methods for Function YearPpublish
in Package RISmed ~~
Description
~~ Methods for function YearPpublish
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPubDate
from Medline
object.
Description
Extractor for the YearPubDate
of a Medline
object. This date corresponds to the date the article was PubDate.
Usage
YearPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPubDate(myeloma)
~~ Methods for Function YearPubDate
in Package RISmed ~~
Description
~~ Methods for function YearPubDate
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPubmed
from Medline
object.
Description
Extractor for the YearPubmed
of a Medline
object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
YearPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPubmed(myeloma)
~~ Methods for Function YearPubmed
in Package RISmed ~~
Description
~~ Methods for function YearPubmed
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearReceived
from Medline
object.
Description
Extractor for the YearReceived
of a Medline
object. This date corresponds to the date the article was received.
Usage
YearReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearReceived(myeloma)
~~ Methods for Function YearReceived
in Package RISmed ~~
Description
~~ Methods for function YearReceived
in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearRevised
from Medline
object.
Description
Extractor for the YearRevised
of a Medline
object. This date corresponds to the date the article was Revised.
Usage
YearRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearRevised(myeloma)
~~ Methods for Function YearRevised
in Package RISmed ~~
Description
~~ Methods for function YearRevised
in package RISmed ~~
Methods
signature(object = "Medline")
Concatenate Medline
Description
Concatenates multiple Medline objects
Usage
## S4 method for signature 'Medline'
c(x, ...)
Arguments
x |
a Medline object |
... |
Additional Medline objects to concatenate |
Value
A Medline object
Example of results from EUtilsGet
Description
First five records of query of NCBI PubMed for "myeloma[MeSh]" in the past year (at the time of this writing) as a Medline object.
Usage
myeloma
Format
A list object with five PubMed article records.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
Source
PubMed database of the US National Library of Medicine
See Also
Print method for Medline object
Description
Print object of class Medline
Methods
signature(object = "Medline")
-
Query translation (if provided) and total fetched record count for
Medline
object.
Print method for EUtilsSummary object
Description
Print object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary")
-
Query translation for
EUtilsSummary
object.
Show method for Medline object
Description
Show object of class Medline
Methods
signature(object = "Medline")
-
Query translation (if provided) and total fetched record count for
Medline
object.
Show method for EUtilsSummary object
Description
Show object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary")
-
Query translation for
EUtilsSummary
object.
Summary method for EUtilsSummary object
Description
Summary of object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary",...)
-
Returns the number of records and id vector.