| Version: | 2.3.0 |
| Type: | Package |
| Title: | Download Content from NCBI Databases |
| Date: | 2021-07-02 |
| Depends: | R (≥ 3.6.0), methods |
| Imports: | httr, xml2 |
| Description: | A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed. |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| LazyData: | true |
| NeedsCompilation: | no |
| Packaged: | 2021-07-05 06:21:51 UTC; skovalchik |
| Author: | Stephanie Kovalchik [aut, cre] |
| Maintainer: | Stephanie Kovalchik <s.a.kovalchik@gmail.com> |
| RoxygenNote: | 7.1.1 |
| Repository: | CRAN |
| Date/Publication: | 2021-07-05 07:10:06 UTC |
Download content from NCBI databases.
Description
Download content from NCBI databases. This package is intended to facilitate analyses of NCBI database content. This package is not intended for reference management.
Details
| Package: | RISmed |
| Type: | Package |
| Version: | 2.1.3 |
| Date: | 2014-7-20 |
| License: | GPL (>=2) |
| LazyLoad: | yes |
Note on usage:
In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.
Author(s)
Maintainer: Stephanie Kovalchik <s.a.kovalchik@gmail.com>
Extracts AbstractText from Medline object.
Description
Extractor for the AbstractText of a Medline object.
Usage
AbstractText(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
AbstractText(myeloma)
~~ Methods for Function AbstractText in Package RISmed ~~
Description
~~ Methods for function AbstractText in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Affiliation from Medline object.
Description
Extractor for the Affiliation of a Medline object.
Usage
Affiliation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Affiliation(myeloma)
~~ Methods for Function Affiliation in Package RISmed ~~
Description
~~ Methods for function Affiliation in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ArticleId from Medline object.
Description
Extractor for the ArticleId of a Medline object.
Usage
ArticleId(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ArticleId(myeloma)
~~ Methods for Function ArticleId in Package RISmed ~~
Description
~~ Methods for function ArticleId in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ArticleTitle from Medline object.
Description
Extractor for the ArticleTitle of a Medline object.
Usage
ArticleTitle(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ArticleTitle(myeloma)
~~ Methods for Function ArticleTitle in Package RISmed ~~
Description
~~ Methods for function ArticleTitle in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Author from Medline object.
Description
Extractor for the Author of a Medline object.
Usage
Author(object)
Arguments
object |
instance of class |
Value
List by Pubmed article. Each list contains a data frame with CollectiveName, LastName, ForeName, Initials, and order of article authors.
See Also
Examples
data(myeloma)
Author(myeloma)
~~ Methods for Function Author in Package RISmed ~~
Description
~~ Methods for function Author in package RISmed ~~
Methods
signature(object = "Medline")-
List by Pubmed article. Each list contains a data frame with
LastName,ForeName,Initials, andorderof article authors.
Extracts COIStatement from Medline object.
Description
Extractor for the COIStatement of a Medline object.
Usage
COIStatement(object)
Arguments
object |
instance of class |
Value
vector
See Also
~~ Methods for Function COIStatement in Package RISmed ~~
Description
~~ Methods for function COIStatement in package RISmed ~~
Methods
signature(object = "Medline")
List of citing article titles where listed in PubMed.
Description
Retrieves the number of citations in PubMed Central for the articles contained in the Medline object.
Usage
Citations(object)
Arguments
object |
instance of class |
Value
vector
See Also
~~ Methods for Function Citations in Package RISmed ~~
Description
~~ Methods for function Citations in package RISmed ~~
Methods
signature(object = "Medline")
Extracts CopyrightInformation from Medline object.
Description
Extractor for the CopyrightInformation of a Medline object.
Usage
CopyrightInformation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
CopyrightInformation(myeloma)
~~ Methods for Function CopyrightInformation in Package RISmed ~~
Description
~~ Methods for function CopyrightInformation in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Country from Medline object.
Description
Extractor for the Country of a Medline object.
Usage
Country(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Country(myeloma)
~~ Methods for Function Country in Package RISmed ~~
Description
~~ Methods for function Country in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DOI from Medline object.
Description
Extractor for the DOI of a Medline object.
Usage
DOI(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DOI(myeloma)
~~ Methods for Function DOI in Package RISmed ~~
Description
~~ Methods for function DOI in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayAccepted from Medline object.
Description
Extractor for the DayAccepted of a Medline object. This date corresponds to the date the article was accepted.
Usage
DayAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayAccepted(myeloma)
~~ Methods for Function DayAccepted in Package RISmed ~~
Description
~~ Methods for function DayAccepted in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayArticleDate from Medline object.
Description
Extractor for the DayArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
DayArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayArticleDate(myeloma)
~~ Methods for Function DayArticleDate in Package RISmed ~~
Description
~~ Methods for function DayArticleDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayEntrez from Medline object.
Description
Extractor for the DayEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
DayEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayEntrez(myeloma)
~~ Methods for Function DayEntrez in Package RISmed ~~
Description
~~ Methods for function DayEntrez in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayEpublish from Medline object.
Description
Extractor for the DayEpublish of a Medline object. This date corresponds to the date the article was published online.
Usage
DayEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayEpublish(myeloma)
~~ Methods for Function DayEpublish in Package RISmed ~~
Description
~~ Methods for function DayEpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayMedline from Medline object.
Description
Extractor for the DayMedline of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
DayMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayMedline(myeloma)
~~ Methods for Function DayMedline in Package RISmed ~~
Description
~~ Methods for function DayMedline in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPmc from Medline object.
Description
Extractor for the DayPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
DayPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPmc(myeloma)
~~ Methods for Function DayPmc in Package RISmed ~~
Description
~~ Methods for function DayPmc in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPpublish from Medline object.
Description
Extractor for the DayPpublish of a Medline object. This date corresponds to the date the article was published in print.
Usage
DayPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPpublish(myeloma)
~~ Methods for Function DayPpublish in Package RISmed ~~
Description
~~ Methods for function DayPpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPubDate from Medline object.
Description
Extractor for the DayPubDate of a Medline object. This date corresponds to the date the article was PubDate.
Usage
DayPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPubDate(myeloma)
~~ Methods for Function DayPubDate in Package RISmed ~~
Description
~~ Methods for function DayPubDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayPubmed from Medline object.
Description
Extractor for the DayPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
DayPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayPubmed(myeloma)
~~ Methods for Function DayPubmed in Package RISmed ~~
Description
~~ Methods for function DayPubmed in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayReceived from Medline object.
Description
Extractor for the DayReceived of a Medline object. This date corresponds to the date the article was received.
Usage
DayReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayReceived(myeloma)
~~ Methods for Function DayReceived in Package RISmed ~~
Description
~~ Methods for function DayReceived in package RISmed ~~
Methods
signature(object = "Medline")
Extracts DayRevised from Medline object.
Description
Extractor for the DayRevised of a Medline object. This date corresponds to the date the article was Revised.
Usage
DayRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
DayRevised(myeloma)
~~ Methods for Function DayRevised in Package RISmed ~~
Description
~~ Methods for function DayRevised in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ELocationID from Medline object.
Description
Extractor for the ELocationID of a Medline object.
Usage
ELocationID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ELocationID(myeloma)
~~ Methods for Function ELocationID in Package RISmed ~~
Description
~~ Methods for function ELocationID in package RISmed ~~
Methods
signature(object = "Medline")
Results of an NCBI EUtils query
Description
Download results of a query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsGet(x,type="efetch",db="pubmed")
Arguments
x |
Either vector of NCBI records ids, i.e. returned ids from |
type |
string indicating type of NCBI Eutility, |
db |
string indicating the NCBI database used in query |
Details
Possible E-utilities to supply to type are efetch, esummary, and elink.
The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Note on usage:
In order not to overload the E-utility servers, NCBI recommends that users post no more than three URL requests per second and limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time during weekdays. Failure to comply with this policy may result in an IP address being blocked from accessing NCBI.
Value
For queries to PubMed, a list by article, with named vectors for each field of the article result.
For all other database, a list of the XML tree strucure used where XML output is available in E-Utils.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Summary help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
See Also
Construct URL to make NCBI EUtils query
Description
Construct a URL query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsQuery(query,type="esearch",db="pubmed",...)
Arguments
query |
string query as given in NCBI search box |
type |
string indicating type of NCBI Eutility |
db |
string indicating the NCBI database used in query |
... |
additional limits added to query |
Details
Possible E-utilities to supply to type are einfo, esearch, epost, esummary, elink, egquery, espell.
The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Limits that can be supplied to ... to refine the query include:
reldate | Limits search results to be within the specified number of days from current date. |
mindate | Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate. |
maxdate | Maximum of date range for search results; must be supplied with mindate. |
datetype | Which date field to use in setting date limits. Possible choices are edat, Entrez date, which is the date article was added to Entez, or ppdt, the article publication date. Default is edat. |
retstart | Where in the sequence of returned results to begin retrieving, default is 0. |
retmax | Maximum number of records to retrieve, default is 1000. |
Value
String URL to access NCBI E-utility.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Query help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
Examples
# PUBMED QUERY
EUtilsQuery("myeloma[ti] jones[au]")
# RESTRICT TO RECORDS WITHIN LAST 30 days
EUtilsQuery("myeloma[ti] jones[au]",reldat=30)
Get summary of NCBI EUtils query
Description
Get summary information on the results of a query for any database of the National Center for Biotechnology Information (NCBI).
Usage
EUtilsSummary(query,type="esearch",db="pubmed",url=NULL,encoding="unknown",...)
Arguments
query |
string query as given in NCBI search box |
type |
string indicating type of NCBI Eutility |
db |
string indicating the NCBI database used in query |
url |
string of url to bypass query construction |
encoding |
encoding to be assumed for input strings, see |
... |
additional limits added to query |
Details
Possible E-utilities to supply to type are einfo, esearch, epost, esummary, elink, egquery, espell.
The database name supplied to db can be any valid Entrez database, such as pubmed, protein, nlm, etc.
For further details on available E-utilities and databases visit https://www.ncbi.nlm.nih.gov/books/NBK25499/.
Limits that can be supplied to ... to refine the query include:
reldate | Limits search results to be within the specified number of days from current date. |
mindate | Minimum of date range for search results (examples: 2002; 2002/01/01); must be supplied with maxdate. |
maxdate | Maximum of date range for search results; must be supplied with mindate. |
datetype | Which date field to use in setting date limits. Possible choices are edat, Entrez date, which is the date article was added to Entez, or ppdt, the article publication date. Default is edat. |
retstart | Where in the sequence of returned results to begin retrieving, default is 0. |
retmax | Maximum number of records to retrieve, default is 1000. |
Value
Returns an EUtilsSummary object.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
References
Summary help:
https://www.ncbi.nlm.nih.gov/books/NBK3827/
MEDLINE/PubMed Field Descriptions
https://www.nlm.nih.gov/bsd/mms/medlineelements.html
See Also
Class "EUtilsSummary"
Description
Summary of query of an NCBI E-utility
Objects from the Class
Objects can be created by calls of the form new("EUtilsSummary", ...).
Slots
db:Name of database
count:total ids
retmax:limit on number of records to return
retstart:numeric indicating where return records start
PMID:character vector of matching ids
querytranslation:character of NCBI translation of query
Methods
- QueryCount
signature(object = "EUtilsSummary"): ...- QueryId
signature(object = "EUtilsSummary"): ...signature(x = "EUtilsSummary"): ...- show
signature(object = "EUtilsSummary"): ...- summary
signature(object = "EUtilsSummary"): ...- QueryTranslation
signature(object = "EUtilsSummary"): ...
Author(s)
Stephanie Kovalchik
Extracts list of GrantID info Medline object including GrantID and GrantAgency where listed in PubMed.
Description
Extractor for the GrantID of a Medline object.
Usage
GrantID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
GrantID(myeloma)
~~ Methods for Function GrantID in Package RISmed ~~
Description
~~ Methods for function GrantID in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourAccepted from Medline object.
Description
Extractor for the HourAccepted of a Medline object. This date corresponds to the date the article was accepted.
Usage
HourAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourAccepted(myeloma)
~~ Methods for Function HourAccepted in Package RISmed ~~
Description
~~ Methods for function HourAccepted in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourEntrez from Medline object.
Description
Extractor for the HourEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
HourEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourEntrez(myeloma)
~~ Methods for Function HourEntrez in Package RISmed ~~
Description
~~ Methods for function HourEntrez in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourEpublish from Medline object.
Description
Extractor for the HourEpublish of a Medline object. This date corresponds to the date the article was published online.
Usage
HourEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourEpublish(myeloma)
~~ Methods for Function HourEpublish in Package RISmed ~~
Description
~~ Methods for function HourEpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourMedline from Medline object.
Description
Extractor for the HourMedline of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
HourMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourMedline(myeloma)
~~ Methods for Function HourMedline in Package RISmed ~~
Description
~~ Methods for function HourMedline in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPmc from Medline object.
Description
Extractor for the HourPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
HourPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPmc(myeloma)
~~ Methods for Function HourPmc in Package RISmed ~~
Description
~~ Methods for function HourPmc in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPpublish from Medline object.
Description
Extractor for the HourPpublish of a Medline object. This date corresponds to the date the article was published in print.
Usage
HourPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPpublish(myeloma)
~~ Methods for Function HourPpublish in Package RISmed ~~
Description
~~ Methods for function HourPpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourPubmed from Medline object.
Description
Extractor for the HourPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
HourPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourPubmed(myeloma)
~~ Methods for Function HourPubmed in Package RISmed ~~
Description
~~ Methods for function HourPubmed in package RISmed ~~
Methods
signature(object = "Medline")
Extracts HourReceived from Medline object.
Description
Extractor for the HourReceived of a Medline object. This date corresponds to the date the article was received.
Usage
HourReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
HourReceived(myeloma)
~~ Methods for Function HourReceived in Package RISmed ~~
Description
~~ Methods for function HourReceived in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISOAbbreviation from Medline object.
Description
Extractor for the ISOAbbreviation of a Medline object.
Usage
ISOAbbreviation(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISOAbbreviation(myeloma)
~~ Methods for Function ISOAbbreviation in Package RISmed ~~
Description
~~ Methods for function ISOAbbreviation in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISSN from Medline object.
Description
Extractor for the ISSN of a Medline object.
Usage
ISSN(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISSN(myeloma)
~~ Methods for Function ISSN in Package RISmed ~~
Description
~~ Methods for function ISSN in package RISmed ~~
Methods
signature(object = "Medline")
Extracts ISSNLinking from Medline object.
Description
Extractor for the ISSNLinking of a Medline object.
Usage
ISSNLinking(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
ISSNLinking(myeloma)
~~ Methods for Function ISSNLinking in Package RISmed ~~
Description
~~ Methods for function ISSNLinking in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Issue from Medline object.
Description
Extractor for the Issue of a Medline object.
Usage
Issue(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Issue(myeloma)
~~ Methods for Function Issue in Package RISmed ~~
Description
~~ Methods for function Issue in package RISmed ~~
Methods
signature(object = "Medline")
Extracts list of Keywords info from Medline object.
Description
Extractor for the Keywords of a Medline object.
Usage
Keywords(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Keywords(myeloma)
~~ Methods for Function Keywords in Package RISmed ~~
Description
~~ Methods for function Keywords in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Language from Medline object.
Description
Extractor for the Language of a Medline object.
Usage
Language(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Language(myeloma)
~~ Methods for Function Language in Package RISmed ~~
Description
~~ Methods for function Language in package RISmed ~~
Methods
signature(object = "Medline")
Class "Medline"
Description
Class for Medline citation of query to PubMed.
Objects from the Class
Objects can be created by calls of the form new("Medline", ...).
Slots
Unless stated otherwise, each of the components is a vector of the given field where each element corresponds to a PubMed article.
Query:PMID:YearPubDate:MonthPubDate:DayPubDate:YearRevised:MonthRevised:DayRevised:YearEntrez:MonthEntrez:DayEntrez:HourEntrez:MinuteEntrez:YearArticleDate:MonthArticleDate:DayArticleDate:YearMedline:MonthMedline:DayMedline:HourMedline:MinuteMedline:YearAccepted:MonthAccepted:DayAccepted:HourAccepted:MinuteAccepted:YearReceived:MonthReceived:DayReceived:HourReceived:MinuteReceived:YearEpublish:MonthEpublish:DayEpublish:HourEpublish:MinuteEpublish:YearPpublish:MonthPpublish:DayPpublish:HourPpublish:MinutePpublish:YearPmc:MonthPmc:DayPmc:HourPmc:MinutePmc:YearPubmed:MonthPubmed:DayPubmed:HourPubmed:MinutePubmed:Author:list of data frames giving
LastName,ForeName,Initials, andorderof authors by PubMed article.ISSN:Title:ArticleTitle:ELocationID:AbstractText:Affiliation:Language:PublicationType:MedlineTA:NlmUniqueID:ISSNLinking:PublicationStatus:ArticleId:DOI:Volume:Issue:ISOAbbreviation:MedlinePgn:CopyrightInformation:Country:GrantID:COIStatement:Mesh:list of data frames giving
HeadingandTypeof MeSH term orNAif no terms are in MEDLINE recordKeywords:Citations:
Methods
In addition to print and show methods, each slot of the Medline class has a corresponding extractor of the same name.
signature(x = "Medline", ...): ...- show
signature(object = "Medline"): ...- c
signature(x = "Medline", ...): ...- Query
signature(object = "Medline"): ...- PMID
signature(object = "Medline"): ...- YearPubDate
signature(object = "Medline"): ...- MonthPubDate
signature(object = "Medline"): ...- DayPubDate
signature(object = "Medline"): ...- YearRevised
signature(object = "Medline"): ...- MonthRevised
signature(object = "Medline"): ...- DayRevised
signature(object = "Medline"): ...- YearEntrez
signature(object = "Medline"): ...- MonthEntrez
signature(object = "Medline"): ...- DayEntrez
signature(object = "Medline"): ...- HourEntrez
signature(object = "Medline"): ...- MinuteEntrez
signature(object = "Medline"): ...- YearArticleDate
signature(object = "Medline"): ...- MonthArticleDate
signature(object = "Medline"): ...- DayArticleDate
signature(object = "Medline"): ...- YearMedline
signature(object = "Medline"): ...- MonthMedline
signature(object = "Medline"): ...- DayMedline
signature(object = "Medline"): ...- HourMedline
signature(object = "Medline"): ...- MinuteMedline
signature(object = "Medline"): ...- YearAccepted
signature(object = "Medline"): ...- MonthAccepted
signature(object = "Medline"): ...- DayAccepted
signature(object = "Medline"): ...- HourAccepted
signature(object = "Medline"): ...- MinuteAccepted
signature(object = "Medline"): ...- YearReceived
signature(object = "Medline"): ...- MonthReceived
signature(object = "Medline"): ...- DayReceived
signature(object = "Medline"): ...- HourReceived
signature(object = "Medline"): ...- MinuteReceived
signature(object = "Medline"): ...- YearEpublish
signature(object = "Medline"): ...- MonthEpublish
signature(object = "Medline"): ...- DayEpublish
signature(object = "Medline"): ...- HourEpublish
signature(object = "Medline"): ...- MinuteEpublish
signature(object = "Medline"): ...- YearPpublish
signature(object = "Medline"): ...- MonthPpublish
signature(object = "Medline"): ...- DayPpublish
signature(object = "Medline"): ...- HourPpublish
signature(object = "Medline"): ...- MinutePpublish
signature(object = "Medline"): ...- YearPmc
signature(object = "Medline"): ...- MonthPmc
signature(object = "Medline"): ...- DayPmc
signature(object = "Medline"): ...- HourPmc
signature(object = "Medline"): ...- MinutePmc
signature(object = "Medline"): ...- YearPubmed
signature(object = "Medline"): ...- MonthPubmed
signature(object = "Medline"): ...- DayPubmed
signature(object = "Medline"): ...- HourPubmed
signature(object = "Medline"): ...- MinutePubmed
signature(object = "Medline"): ...- Author
signature(object = "Medline"): ...- ISSN
signature(object = "Medline"): ...- Title
signature(object = "Medline"): ...- ArticleTitle
signature(object = "Medline"): ...- ELocationID
signature(object = "Medline"): ...- AbstractText
signature(object = "Medline"): ...- Affiliation
signature(object = "Medline"): ...- Language
signature(object = "Medline"): ...- PublicationType
signature(object = "Medline"): ...- MedlineTA
signature(object = "Medline"): ...- NlmUniqueID
signature(object = "Medline"): ...- ISSNLinking
signature(object = "Medline"): ...- PublicationStatus
signature(object = "Medline"): ...- ArticleId
signature(object = "Medline"): ...- DOI
signature(object = "Medline"): ...- Volume
signature(object = "Medline"): ...- Issue
signature(object = "Medline"): ...- ISOAbbreviation
signature(object = "Medline"): ...- MedlinePgn
signature(object = "Medline"): ...- CopyrightInformation
signature(object = "Medline"): ...- Country
signature(object = "Medline"): ...- GrantID
signature(object = "Medline"): ...- COIStatement
signature(object = "Medline"): ...- Mesh
signature(object = "Medline"): ...- Keywords
signature(object = "Medline"): ...- Affiliations
signature(object = "Medline"): ...
Author(s)
Stephanie Kovalchik
Extracts MedlinePgn from Medline object.
Description
Extractor for the MedlinePgn of a Medline object.
Usage
MedlinePgn(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
MedlinePgn(myeloma)
~~ Methods for Function MedlinePgn in Package RISmed ~~
Description
~~ Methods for function MedlinePgn in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MedlineTA from Medline object.
Description
Extractor for the MedlineTA of a Medline object.
Usage
MedlineTA(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
MedlineTA(myeloma)
~~ Methods for Function MedlineTA in Package RISmed ~~
Description
~~ Methods for function MedlineTA in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Mesh headings from Medline object.
Description
Extractor for the Mesh headings of a Medline object.
Usage
Mesh(object)
Arguments
object |
instance of class |
Details
In Process and publisher-supplied records lack MeSH terms. See the MeSH home page https://www.nlm.nih.gov/mesh/meshhome.html for additional information about MeSH. Note that more recent records may lack MeSH headings.
Value
List by Pubmed article. Each list contains a data frame with Heading and Type. The Heading is a MeSH Term and Type is either a Descriptor or a Qualifier of a Descriptor term. Qualifiers of a Descriptor immediately follow the Descriptor term in the data frame. When MeSH headings have not been included with a MEDLINE record, the list will contain NAs (see details).
See Also
~~ Methods for Function Mesh in Package RISmed ~~
Description
~~ Methods for function Mesh in package RISmed ~~
Methods
signature(object = "Medline")-
List by Pubmed article. Each list contains a data frame with
HeadingandType. TheHeadingis a MeSH Term andTypeis either aDescriptoror aQualifierof a Descriptor term.
Extracts MinuteAccepted from Medline object.
Description
Extractor for the MinuteAccepted of a Medline object. This date corresponds to the date the article was accepted.
Usage
MinuteAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteAccepted(myeloma)
~~ Methods for Function MinuteAccepted in Package RISmed ~~
Description
~~ Methods for function MinuteAccepted in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteEntrez from Medline object.
Description
Extractor for the MinuteEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
MinuteEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteEntrez(myeloma)
~~ Methods for Function MinuteEntrez in Package RISmed ~~
Description
~~ Methods for function MinuteEntrez in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteEpublish from Medline object.
Description
Extractor for the MinuteEpublish of a Medline object. This date corresponds to the date the article was published online.
Usage
MinuteEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteEpublish(myeloma)
~~ Methods for Function MinuteEpublish in Package RISmed ~~
Description
~~ Methods for function MinuteEpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteMedline from Medline object.
Description
Extractor for the MinuteMedline of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
MinuteMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteMedline(myeloma)
~~ Methods for Function MinuteMedline in Package RISmed ~~
Description
~~ Methods for function MinuteMedline in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePmc from Medline object.
Description
Extractor for the MinutePmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MinutePmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePmc(myeloma)
~~ Methods for Function MinutePmc in Package RISmed ~~
Description
~~ Methods for function MinutePmc in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePpublish from Medline object.
Description
Extractor for the MinutePpublish of a Medline object. This date corresponds to the date the article was published in print.
Usage
MinutePpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePpublish(myeloma)
~~ Methods for Function MinutePpublish in Package RISmed ~~
Description
~~ Methods for function MinutePpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinutePubmed from Medline object.
Description
Extractor for the MinutePubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MinutePubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinutePubmed(myeloma)
~~ Methods for Function MinutePubmed in Package RISmed ~~
Description
~~ Methods for function MinutePubmed in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MinuteReceived from Medline object.
Description
Extractor for the MinuteReceived of a Medline object. This date corresponds to the date the article was received.
Usage
MinuteReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MinuteReceived(myeloma)
~~ Methods for Function MinuteReceived in Package RISmed ~~
Description
~~ Methods for function MinuteReceived in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthAccepted from Medline object.
Description
Extractor for the MonthAccepted of a Medline object. This date corresponds to the date the article was accepted.
Usage
MonthAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthAccepted(myeloma)
~~ Methods for Function MonthAccepted in Package RISmed ~~
Description
~~ Methods for function MonthAccepted in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthArticleDate from Medline object.
Description
Extractor for the MonthArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
MonthArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthArticleDate(myeloma)
~~ Methods for Function MonthArticleDate in Package RISmed ~~
Description
~~ Methods for function MonthArticleDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthEntrez from Medline object.
Description
Extractor for the MonthEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
MonthEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthEntrez(myeloma)
~~ Methods for Function MonthEntrez in Package RISmed ~~
Description
~~ Methods for function MonthEntrez in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthEpublish from Medline object.
Description
Extractor for the MonthEpublish of a Medline object. This date corresponds to the date the article was published online.
Usage
MonthEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthEpublish(myeloma)
~~ Methods for Function MonthEpublish in Package RISmed ~~
Description
~~ Methods for function MonthEpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthMedline from Medline object.
Description
Extractor for the MonthMedline of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
MonthMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthMedline(myeloma)
~~ Methods for Function MonthMedline in Package RISmed ~~
Description
~~ Methods for function MonthMedline in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPmc from Medline object.
Description
Extractor for the MonthPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MonthPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPmc(myeloma)
~~ Methods for Function MonthPmc in Package RISmed ~~
Description
~~ Methods for function MonthPmc in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPpublish from Medline object.
Description
Extractor for the MonthPpublish of a Medline object. This date corresponds to the date the article was published in print.
Usage
MonthPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPpublish(myeloma)
~~ Methods for Function MonthPpublish in Package RISmed ~~
Description
~~ Methods for function MonthPpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPubDate from Medline object.
Description
Extractor for the MonthPubDate of a Medline object. This date corresponds to the date the article was PubDate.
Usage
MonthPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPubDate(myeloma)
~~ Methods for Function MonthPubDate in Package RISmed ~~
Description
~~ Methods for function MonthPubDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthPubmed from Medline object.
Description
Extractor for the MonthPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
MonthPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthPubmed(myeloma)
~~ Methods for Function MonthPubmed in Package RISmed ~~
Description
~~ Methods for function MonthPubmed in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthReceived from Medline object.
Description
Extractor for the MonthReceived of a Medline object. This date corresponds to the date the article was received.
Usage
MonthReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthReceived(myeloma)
~~ Methods for Function MonthReceived in Package RISmed ~~
Description
~~ Methods for function MonthReceived in package RISmed ~~
Methods
signature(object = "Medline")
Extracts MonthRevised from Medline object.
Description
Extractor for the MonthRevised of a Medline object. This date corresponds to the date the article was Revised.
Usage
MonthRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
MonthRevised(myeloma)
~~ Methods for Function MonthRevised in Package RISmed ~~
Description
~~ Methods for function MonthRevised in package RISmed ~~
Methods
signature(object = "Medline")
Extracts NlmUniqueID from Medline object.
Description
Extractor for the NlmUniqueID of a Medline object.
Usage
NlmUniqueID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
NlmUniqueID(myeloma)
~~ Methods for Function NlmUniqueID in Package RISmed ~~
Description
~~ Methods for function NlmUniqueID in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PMID from Medline object.
Description
Extractor for the PMID of a Medline object.
Usage
PMID(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
PMID(myeloma)
~~ Methods for Function PMID in Package RISmed ~~
Description
~~ Methods for function PMID in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PublicationStatus from Medline object.
Description
Extractor for the PublicationStatus of a Medline object.
Usage
PublicationStatus(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
PublicationStatus(myeloma)
~~ Methods for Function PublicationStatus in Package RISmed ~~
Description
~~ Methods for function PublicationStatus in package RISmed ~~
Methods
signature(object = "Medline")
Extracts PublicationType from Medline object.
Description
Extractor for the PublicationType of a Medline object.
Usage
PublicationType(object)
Arguments
object |
instance of class |
Value
list
See Also
Examples
data(myeloma)
PublicationType(myeloma)
~~ Methods for Function PublicationType in Package RISmed ~~
Description
~~ Methods for function PublicationType in package RISmed ~~
Methods
signature(object = "Medline")
Extract Query from Medline object.
Description
Extractor for the translated Query of a Medline object.
Usage
Query(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Query(myeloma)
~~ Methods for Function Query in Package RISmed ~~
Description
~~ Methods for function Query in package RISmed ~~
Methods
signature(object = "Medline")
Count of record results for EUtilsQuery
Description
Returns the number of Ids from a E-utility query
Usage
QueryCount(object)
Arguments
object |
object of the |
Value
numeric count
Author(s)
Stephanie Kovalchik
See Also
Get ids from EUtilsQuery
Description
Returns the vector Ids from a E-utility query
Usage
QueryId(object)
Arguments
object |
object of the |
Value
character vector of ids
Author(s)
Stephanie Kovalchik
See Also
Get the NCBI query translation from EUtilsQuery
Description
Returns the string translation of a E-utility query
Usage
QueryTranslation(object)
Arguments
object |
object of the |
Value
character query translation
Author(s)
Stephanie Kovalchik
See Also
Extracts Title from Medline object.
Description
Extractor for the Title of a Medline object.
Usage
Title(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Title(myeloma)
~~ Methods for Function Title in Package RISmed ~~
Description
~~ Methods for function Title in package RISmed ~~
Methods
signature(object = "Medline")
Extracts Volume from Medline object.
Description
Extractor for the Volume of a Medline object.
Usage
Volume(object)
Arguments
object |
instance of class |
Value
vector
See Also
Examples
data(myeloma)
Volume(myeloma)
~~ Methods for Function Volume in Package RISmed ~~
Description
~~ Methods for function Volume in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearAccepted from Medline object.
Description
Extractor for the YearAccepted of a Medline object. This date corresponds to the date the article was accepted.
Usage
YearAccepted(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearAccepted(myeloma)
~~ Methods for Function YearAccepted in Package RISmed ~~
Description
~~ Methods for function YearAccepted in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearArticleDate from Medline object.
Description
Extractor for the YearArticleDate of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
YearArticleDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearArticleDate(myeloma)
~~ Methods for Function YearArticleDate in Package RISmed ~~
Description
~~ Methods for function YearArticleDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearEntrez from Medline object.
Description
Extractor for the YearEntrez of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
YearEntrez(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearEntrez(myeloma)
~~ Methods for Function YearEntrez in Package RISmed ~~
Description
~~ Methods for function YearEntrez in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearEpublish from Medline object.
Description
Extractor for the YearEpublish of a Medline object. This date corresponds to the date the article was published online.
Usage
YearEpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearEpublish(myeloma)
~~ Methods for Function YearEpublish in Package RISmed ~~
Description
~~ Methods for function YearEpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearMedline from Medline object.
Description
Extractor for the YearMedline of a Medline object. This date corresponds to the date the article was ArticleDate.
Usage
YearMedline(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearMedline(myeloma)
~~ Methods for Function YearMedline in Package RISmed ~~
Description
~~ Methods for function YearMedline in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPmc from Medline object.
Description
Extractor for the YearPmc of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
YearPmc(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPmc(myeloma)
~~ Methods for Function YearPmc in Package RISmed ~~
Description
~~ Methods for function YearPmc in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPpublish from Medline object.
Description
Extractor for the YearPpublish of a Medline object. This date corresponds to the date the article was published in print.
Usage
YearPpublish(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPpublish(myeloma)
~~ Methods for Function YearPpublish in Package RISmed ~~
Description
~~ Methods for function YearPpublish in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPubDate from Medline object.
Description
Extractor for the YearPubDate of a Medline object. This date corresponds to the date the article was PubDate.
Usage
YearPubDate(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPubDate(myeloma)
~~ Methods for Function YearPubDate in Package RISmed ~~
Description
~~ Methods for function YearPubDate in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearPubmed from Medline object.
Description
Extractor for the YearPubmed of a Medline object. This date corresponds to the date the article was made available through Pubmed Central.
Usage
YearPubmed(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearPubmed(myeloma)
~~ Methods for Function YearPubmed in Package RISmed ~~
Description
~~ Methods for function YearPubmed in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearReceived from Medline object.
Description
Extractor for the YearReceived of a Medline object. This date corresponds to the date the article was received.
Usage
YearReceived(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearReceived(myeloma)
~~ Methods for Function YearReceived in Package RISmed ~~
Description
~~ Methods for function YearReceived in package RISmed ~~
Methods
signature(object = "Medline")
Extracts YearRevised from Medline object.
Description
Extractor for the YearRevised of a Medline object. This date corresponds to the date the article was Revised.
Usage
YearRevised(object)
Arguments
object |
instance of class |
Value
vector
References
https://www.nlm.nih.gov/bsd/mms/medlineelements.html#phst
See Also
Examples
data(myeloma)
YearRevised(myeloma)
~~ Methods for Function YearRevised in Package RISmed ~~
Description
~~ Methods for function YearRevised in package RISmed ~~
Methods
signature(object = "Medline")
Concatenate Medline
Description
Concatenates multiple Medline objects
Usage
## S4 method for signature 'Medline'
c(x, ...)
Arguments
x |
a Medline object |
... |
Additional Medline objects to concatenate |
Value
A Medline object
Example of results from EUtilsGet
Description
First five records of query of NCBI PubMed for "myeloma[MeSh]" in the past year (at the time of this writing) as a Medline object.
Usage
myeloma
Format
A list object with five PubMed article records.
Author(s)
Stephanie Kovalchik s.a.kovalchik@gmail.com
Source
PubMed database of the US National Library of Medicine
See Also
Print method for Medline object
Description
Print object of class Medline
Methods
signature(object = "Medline")-
Query translation (if provided) and total fetched record count for
Medlineobject.
Print method for EUtilsSummary object
Description
Print object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary")-
Query translation for
EUtilsSummaryobject.
Show method for Medline object
Description
Show object of class Medline
Methods
signature(object = "Medline")-
Query translation (if provided) and total fetched record count for
Medlineobject.
Show method for EUtilsSummary object
Description
Show object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary")-
Query translation for
EUtilsSummaryobject.
Summary method for EUtilsSummary object
Description
Summary of object of class EUtilsSummary
Methods
signature(object = "EUtilsSummary",...)-
Returns the number of records and id vector.