Title:	Digitization of Phytosociological Relevés
Version:	0.1.6
Description:	Simple and fast tool for transforming phytosociological vegetation data into digital form for the following analysis. Danihelka, Chrtek, and Kaplan (2012, ISSN:00327786). Hennekens, and Schaminée (2001) <doi:10.2307/3237010>. Tichý (2002) <doi:10.1111/j.1654-1103.2002.tb02069.x>. Wickham, François, Henry, Müller (2022) https://CRAN.R-project.org/package=dplyr.
URL:	https://plant-ecology-lab-czu.com/rveg/
License:	GPL (≥ 3)
Encoding:	UTF-8
RoxygenNote:	7.3.1
Imports:	dplyr, utils
Suggests:	knitr, rmarkdown
VignetteBuilder:	knitr
NeedsCompilation:	no
Packaged:	2024-11-22 19:04:55 UTC; sesitcsl2
Author:	Přemysl Král [aut, cre], Jan Douda [aut]
Maintainer:	Přemysl Král <kralp@fzp.czu.cz>
Repository:	CRAN
Date/Publication:	2024-11-22 19:30:02 UTC

Rveg: Digitization of Phytosociological Relevés

Description

Simple and fast tool for transforming phytosociological vegetation data into digital form for the following analysis. For detailed guide run vignette("Rveg","Rveg") or check the quick start guide on https://github.com/sesitcsl2/Rveg

Author(s)

Maintainer: Přemysl Král kralp@fzp.czu.cz (ORCID)

Authors:

• Jan Douda douda@fzp.czu.cz (ORCID)

References

Danihelka, Chrtek, and Kaplan (2012, ISSN:00327786), "Checklist of vascular plants of the czech republic. Preslia".

Hennekens, and Schaminée (2001) doi:10.2307/3237010, "TURBOVEG, a comprehensive data base management system for vegetation data. Journal of Vegetation Science".

Tichý (2002) doi:10.1111/j.1654-1103.2002.tb02069.x, "JUICE, software for vegetation classification. Journal of Vegetation Science".

Wickham, François, Henry, Müller (2022) https://CRAN.R-project.org/package=dplyr, "dplyr: A Grammar of Data Manipulation".

See Also

Useful links:

• https://plant-ecology-lab-czu.com/rveg/

CreateChecklist

Description

Create a custom checklist with species ShortNames

Usage

CreateChecklist(specieslist, export = "export")

Arguments

Value

txt file used as checklist in Rveg functions

Examples

## NOT RUN
if (interactive()) {
CreateChecklist(specieslist = paste0(path.package("Rveg"),
"/extdata/SpeciesList"))
}

RvegCheck

Description

Checking your DATABASE for duplicity and allowing to export table with full species name (not Rveg editable anymore).

Usage

RvegCheck(
  DATABASE,
  fullnames = FALSE,
  export = "export",
  checklist = "default"
)

Arguments

Value

Export csv file releve table

Examples

## NOT RUN
if (interactive()) {
  RvegCheck(DATABASE = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegCombine

Description

Merging species or layers in the database

Usage

RvegCombine(database, export = "export", checklist = "default")

Arguments

Value

export two csv files, one for releve and one for header

Examples

## NOT RUN
if (interactive()) {
  RvegCombine(database = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegLoad

Description

Reading your Rveg database

Usage

RvegLoad(DATABASE = "default", CustomScale = FALSE, checklist = "default")

Arguments

Value

read the database in one object

Examples

  RvegLoad()

RvegMerge

Description

Merge two Rveg databases

Usage

RvegMerge(x, y, save = "export_merge", head = TRUE)

Arguments

Value

export two csv files, one for releve and one for header

Examples

## NOT RUN
if (interactive()) {
  RvegMerge(x = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ), y = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
  read.csv("export_mergeREL.csv", row.names = 1)
}

RvegToJuice

Description

Export Rveg database to Juice software compatible format

Usage

RvegToJuice(Data, checklist = "default", export = "export")

Arguments

Value

csv file which is readible by Juice

Examples

## NOT RUN
if (interactive()) {
  RvegToJuice(Data = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

RvegToTv

Description

Export Turboveg csv compatible file

Usage

RvegToTv(database, export = "export", ver = 3, checklist = "default")

Arguments

Value

csv file

Examples

## NOT RUN
if (interactive()) {
  RvegToTv(database = paste0(
    path.package("Rveg"),
    "/extdata/example_db"
  ))
}

TvToRveg

Description

Export Turboveg csv file to Rveg database compatible format

Usage

TvToRveg(tv, export = "export", checklist = "default")

Arguments

Value

csv file

Examples

## NOT RUN
if (interactive()) {
  TvToRveg(tv = paste0(
    path.package("Rveg"),
    "/extdata/tvexport.csv"
  ))
}

addReleve

Description

Digitizing and editing your releves - Rveg database

Usage

addReleve(
  DATABASE = "NEW",
  SAVE = "default",
  checklist = "default",
  extrahead = NULL,
  start = TRUE
)

Arguments

Value

export two csv files, one for releve and one for header (Rveg database)

Examples

## NOT RUN
if (interactive()) {
  addReleve()
}